Jatropha Genome Database

JcCA0302821.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0302821.10 + phase: 0 
         (1125 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11645                                                            454   e-127

>KJC_c11645 
          Length = 250

 Score =  454 bits (229), Expect = e-127
 Identities = 250/253 (98%), Gaps = 3/253 (1%)
 Strand = Plus / Minus

                                                                        
Query: 850  tgggacaaagggaaggctcttgaatttttgttggagtcccttggattcgccaattgcacc 909
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 250  tgggacaaagggaaggctcttgaatttt-gttggagtcccttggattcgccaattgcacc 192

                                                                        
Query: 910  gatgtttttcctgtttatatcggagatgatcgcacggatgaagatgcatttaaggtatta 969
            |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191  gatgtttt-cctgtt-atatcggagatgatcgcacggatgaagatgcatttaaggtatta 134

                                                                        
Query: 970  agagaaagaggacaaggttttggtatcttagtgtctaaatttccaaaggacactaatgcc 1029
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 133  agagaaagaggacaaggttttggtatcttagtgtctaaatttccaaaggacactaatgcc 74

                                                                        
Query: 1030 tcttattctctacaagaaccaactcaggttatggattttttgcaacgtttggtagagtgg 1089
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 73   tcttattctctacaagaaccaactcaggttatggattttttgcaacgtttggtagagtgg 14

                         
Query: 1090 aaaaagatatcac 1102
            |||||||||||||
Sbjct: 13   aaaaagatatcac 1