Jatropha Genome Database

JcCA0302101.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0302101.20 + phase: 0 /partial
         (738 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07816                                                            787   0.0  

>KJC_c07816 
          Length = 639

 Score =  787 bits (397), Expect = 0.0
 Identities = 420/425 (98%), Gaps = 2/425 (0%)
 Strand = Plus / Minus

                                                                       
Query: 294 tgaacctgaatatgaagaaatttacagcatagtcatattgcctgattatgttacttttcc 353
           |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||
Sbjct: 639 tgaacctgaatatgaagaaatttacagcatagtcatattgcctgattatgtactttttcc 580

                                                                       
Query: 354 atttccttctgtagatttgcctgagaaggtaaggctggcagttgatgccatcttaatggc 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 atttccttctgtagatttgcctgagaaggtaaggctggcagttgatgccatcttaatggc 520

                                                                       
Query: 414 agaaagtgcagaacggaaagaacagcttgctgcttggacagctgataaaaagcaaattag 473
           |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 519 agaaagtgcaga-cggaaagaacagcttgctgcttggacagctgataaaa-gcaaattag 462

                                                                       
Query: 474 tgcatatgcaatgaatttaccacaaattgacaatggtgttattgttcctccatctggatg 533
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 tgcatatgcaatgaatttaccacaaattgacaatggtgttattgttcctccatctggatg 402

                                                                       
Query: 534 gaaatgtgcgaagtgtgagaaaagagaaaatttgtggttgaatcttagtgatggaacgat 593
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gaaatgtgcgaagtgtgagaaaagagaaaatttgtggttgaatcttagtgatggaacgat 342

                                                                       
Query: 594 cctttgtggtcgaagaaattgggatggaagcggcggaaacaatcatgccattgaacatta 653
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 cctttgtggtcgaagaaattgggatggaagcggcggaaacaatcatgccattgaacatta 282

                                                                       
Query: 654 caaggagacaagttaccctcttgctgtaaaacttgggacaattactgctgatttagaagc 713
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 caaggagacaagttaccctcttgctgtaaaacttgggacaattactgctgatttagaagc 222

                
Query: 714 agcag 718
           |||||
Sbjct: 221 agcag 217