Jatropha Genome Database

JcCA0301881.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0301881.10 - phase: 0 /partial
         (2619 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08051                                                            119   4e-26
KJC_c05624                                                             64   2e-09

>KJC_c08051 
          Length = 502

 Score =  119 bits (60), Expect = 4e-26
 Identities = 186/228 (81%)
 Strand = Plus / Plus

                                                                        
Query: 1371 ttttgagcagttctgtattaatttcaccaatgagaagttgcagcagcatttcaaccagca 1430
            ||||||||||||||| ||||||||  | ||||||||  | ||||| ||||| ||  ||||
Sbjct: 26   ttttgagcagttctgcattaattttgcaaatgagaaacttcagcaacattttaatgagca 85

                                                                        
Query: 1431 tgtattcaaaatggaacaagaagaatatactaaagagcagattgattggagctacattga 1490
            ||| ||||| ||||| |||||||| || |  |||||| ||||| ||||||||||||||||
Sbjct: 86   tgtgttcaagatggagcaagaagagtacagaaaagaggagattaattggagctacattga 145

                                                                        
Query: 1491 atttgttgataatcaagatgttttggatcttatagaaaagaaacctggtggaataattgc 1550
            |||| | ||||| || |||||||| ||||| || || |||||||||  ||| || |||||
Sbjct: 146  atttatagataaccaggatgttttagatctaattgagaagaaacctattgggattattgc 205

                                                            
Query: 1551 gctccttgatgaagcctgcatgttcccaaagtcgacccatgaaacatt 1598
             ||  | || ||||| |||||||||||||| || || || ||||||||
Sbjct: 206  tcttttagacgaagcttgcatgttcccaaaatcaacacacgaaacatt 253


>KJC_c05624 
          Length = 557

 Score = 63.9 bits (32), Expect = 2e-09
 Identities = 50/56 (89%)
 Strand = Plus / Minus

                                                                    
Query: 2431 ttaagagcaatggctgctcgtaagaaattcagatttaggaagcaaactaaagctgc 2486
            ||||| |||||| ||||||||||  | ||||||||||| |||||||||||||||||
Sbjct: 359  ttaagggcaatgactgctcgtaatgagttcagatttagaaagcaaactaaagctgc 304