Jatropha Genome Database

JcCA0300271.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0300271.10 + phase: 0 /partial
         (1467 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04584                                                            791   0.0  

>KJC_c04584 
          Length = 667

 Score =  791 bits (399), Expect = 0.0
 Identities = 406/407 (99%), Gaps = 1/407 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   aagatcatccatgtggctggaaccaaaggaaagggatccacttgcaccttcacagaatct 66
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 aagatcatccatgtggctggaaccaaaggaaagggatccacttgcaccttcacagaatct 608

                                                                       
Query: 67  atactgcgtaactgtggctttcacactgggcttttcacatctcctcacctgatagatatt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 atactgcgtaactgtggctttcacactgggcttttcacatctcctcacctgatagatatt 548

                                                                       
Query: 127 cgtgaaagatttcgtttggatggtggggacatttgtgaagagaaatttttggcatatttc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 547 cgtgaaagatttcgtttggatggtggggacatttgtgaagagaaatttttggcatatttc 488

                                                                       
Query: 187 tggtggtgttatgatagactaaaagaaaagactactgaagatatacctatgcctacttac 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 tggtggtgttatgatagactaaaagaaaagactactgaagatatacctatgcctacttac 428

                                                                       
Query: 247 ttccgcttccttgccttgctagcgttcaagatatttgcagcagagcaggtagatgttgct 306
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 427 ttccgcttccttgccttgctagcgttcaagata-ttgcagcagagcaggtagatgttgct 369

                                                                       
Query: 307 attctggaggtcgggttaggtggaaggtttgatgcaactaatgtggttcaaacacctatt 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 attctggaggtcgggttaggtggaaggtttgatgcaactaatgtggttcaaacacctatt 309

                                                          
Query: 367 gtgtgtggtatagcttcccttgggtacgaccacatggagattcttgg 413
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gtgtgtggtatagcttcccttgggtacgaccacatggagattcttgg 262