Jatropha Genome Database

JcCA0299701.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0299701.10 - phase: 2 /pseudo/partial
         (1692 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03802                                                             88   8e-17
KJC_c02548                                                             52   5e-06

>KJC_c03802 
          Length = 851

 Score = 87.7 bits (44), Expect = 8e-17
 Identities = 120/144 (83%), Gaps = 1/144 (0%)
 Strand = Plus / Minus

                                                                       
Query: 856 tcaattctagcagttgattaccctgtggagaaaatagcttgctacgtttctgatgatgga 915
           ||||||||||| | |||||||||||| || ||| | ||||| || |||||||||||||||
Sbjct: 302 tcaattctagctgctgattaccctgttgaaaaacttgcttgttatgtttctgatgatgga 243

                                                                       
Query: 916 ggtgctctacttacgtttgaggcaatggctgaggcttgcaagctttgctgatttatgggt 975
           ||||| || || || |||||||| ||||| || || |||||| |||||| || | |||||
Sbjct: 242 ggtgcacttctaacatttgaggccatggcagaagc-tgcaagttttgctaatatttgggt 184

                                   
Query: 976 tccattttgtcgaaaacatgatat 999
           ||| || || || |||||||||||
Sbjct: 183 tcctttctgccgtaaacatgatat 160


>KJC_c02548 
          Length = 628

 Score = 52.0 bits (26), Expect = 5e-06
 Identities = 50/58 (86%)
 Strand = Plus / Minus

                                                                     
Query: 177 tgattacatgaattatacagtgcatattcctcctacgccggataatcaaccaatggat 234
           ||||| |||||| ||||| |||||||| || ||||| || ||||||||||| ||||||
Sbjct: 318 tgatttcatgaactatacggtgcatataccacctacccctgataatcaacctatggat 261