Jatropha Genome Database

JcCA0298471.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0298471.10 + phase: 0 
         (207 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c10065                                                            264   7e-71
KJC_c03436                                                             78   9e-15

>KJC_c10065 
          Length = 756

 Score =  264 bits (133), Expect = 7e-71
 Identities = 133/133 (100%)
 Strand = Plus / Plus

                                                                       
Query: 75  agctaatgcacagcagccaaagctttttgttggcatgattctcattctcatttttgctga 134
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 agctaatgcacagcagccaaagctttttgttggcatgattctcattctcatttttgctga 509

                                                                       
Query: 135 ggcactggctctttatggactcattgttggcatcatcctttcttctcgagctgggcaatc 194
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 510 ggcactggctctttatggactcattgttggcatcatcctttcttctcgagctgggcaatc 569

                        
Query: 195 tcgagcagaatag 207
           |||||||||||||
Sbjct: 570 tcgagcagaatag 582


>KJC_c03436 
          Length = 810

 Score = 77.8 bits (39), Expect = 9e-15
 Identities = 108/131 (82%)
 Strand = Plus / Minus

                                                                       
Query: 75  agctaatgcacagcagccaaagctttttgttggcatgattctcattctcatttttgctga 134
           |||||||||||| ||||| || ||||||||||| ||||| ||||| ||||| ||||||||
Sbjct: 366 agctaatgcacaacagcccaaactttttgttggaatgatcctcatcctcatctttgctga 307

                                                                       
Query: 135 ggcactggctctttatggactcattgttggcatcatcctttcttctcgagctgggcaatc 194
            ||| ||||  | ||||| || |||||||| || ||| | ||||| |||||||| || ||
Sbjct: 306 agcattggcattgtatgggcttattgttgggattatcttgtcttcgcgagctggccagtc 247

                      
Query: 195 tcgagcagaat 205
           | | |||||||
Sbjct: 246 tagggcagaat 236