Jatropha Genome Database

JcCA0297261.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0297261.20 + phase: 1 /pseudo/partial
         (1979 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09399                                                             88   1e-16

>KJC_c09399 
          Length = 705

 Score = 87.7 bits (44), Expect = 1e-16
 Identities = 104/124 (83%)
 Strand = Plus / Plus

                                                                        
Query: 1330 atgctcttcctacgagagattgcctctttgacgaccctttgcatgatggcaaaaccatgc 1389
            ||||||||||||| ||||||||||||||||| || ||| | |||||||||||||||||||
Sbjct: 529  atgctcttcctacaagagattgcctctttgaggatcctctccatgatggcaaaaccatgc 588

                                                                        
Query: 1390 tcaagctctggaaccttaataaatatataggagttcttggactatttaattgtcaaggag 1449
            | ||  | |||||||| ||||| | ||  |||||| ||||   |||||| || |||||||
Sbjct: 589  ttaaaatttggaacctcaataagtttactggagttattggtgcatttaactgccaaggag 648

                
Query: 1450 gagg 1453
            ||||
Sbjct: 649  gagg 652