Jatropha Genome Database

JcCA0294151.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0294151.10 + phase: 0 /pseudo/partial
         (690 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04489                                                            767   0.0  

>KJC_c04489 
          Length = 469

 Score =  767 bits (387), Expect = 0.0
 Identities = 394/395 (99%), Gaps = 1/395 (0%)
 Strand = Plus / Minus

                                                                       
Query: 95  gcctaagagctttaaatatagatcctgaaacttggctttcagggaaggcaatcaatatga 154
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 gcctaagagctttaa-tatagatcctgaaacttggctttcagggaaggcaatcaatatga 336

                                                                       
Query: 155 ttcaagaggtgattataacaacttacgagaaggcagaagaatgcttaaacactaattact 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 ttcaagaggtgattataacaacttacgagaaggcagaagaatgcttaaacactaattact 276

                                                                       
Query: 215 atggagttagaagagtaacagaagctctaattccacttctacagctatccacttcagggg 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 atggagttagaagagtaacagaagctctaattccacttctacagctatccacttcagggg 216

                                                                       
Query: 275 ctagaatagttaatgtctcctctttgaggggcgagctaagaagaatcccaagtgaagaac 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 ctagaatagttaatgtctcctctttgaggggcgagctaagaagaatcccaagtgaagaac 156

                                                                       
Query: 335 tgagaaatgaacttaatgatatagaaacactaactgaagagaagctggaggcaatattga 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 tgagaaatgaacttaatgatatagaaacactaactgaagagaagctggaggcaatattga 96

                                                                       
Query: 395 agagatttttgcgagatctaaaagagaattcacttcaagcaggtggatggtcattaatgt 454
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  agagatttttgcgagatctaaaagagaattcacttcaagcaggtggatggtcattaatgt 36

                                              
Query: 455 tgccagcatatggcatttccaaggccactcttaat 489
           |||||||||||||||||||||||||||||||||||
Sbjct: 35  tgccagcatatggcatttccaaggccactcttaat 1