Jatropha Genome Database
- JcCA0293911.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0293911.10 + phase: 2 /TE/pseudo/partial
(912 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c02691 961 0.0
>KJC_c02691
Length = 993
Score = 961 bits (485), Expect = 0.0
Identities = 492/493 (99%), Gaps = 1/493 (0%)
Strand = Plus / Minus
Query: 1 ttactatacgacgcggctatttattgggacacctccgcaggaattcgcccttattgtgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 ttactatacgacgcggctatttattgggacacctccgcaggaattcgcccttattgtgga 624
Query: 61 tactggcagtactgtgacgtatgttccatgttctacgtgtgaacactgcggcaagcatca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 tactggcagtactgtgacgtatgttccatgttctacgtgtgaacactgcggcaagcatca 564
Query: 121 ggacccaaggttccaaccagagtcatctagcacctacaaacccataaaatgcaacccaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ggacccaaggttccaaccagagtcatctagcacctacaaacccataaaatgcaacccaag 504
Query: 181 ttgtaactgtgatggcaagggaaagcaatgcacttatgagagaagatatgctgagatgag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttgtaactgtgatggcaagggaaagcaatgcacttatgagagaagatatgctgagatgag 444
Query: 241 ctctagcagcggtgtgcttgctgacgatgtcatttcttttggaaatgaaagtgagctcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ctctagcagcggtgtgcttgctgacgatgtcatttcttttggaaatgaaagtgagctcac 384
Query: 301 acctaagcgtgctgtgtttggctgtgaaactgtggaaacgggtgatcttttcagccaacg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acctaagcgtgctgtgtttggctgtgaaactgtggaaacgggtgatcttttcagccaacg 324
Query: 361 tgctgatggaataatggggttgggtcgtggtcggctcagtatcgtggatcagcttgttga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgctgatggaataatggggttgggtcgtggtcggctcagtatcgtggatcagcttgttga 264
Query: 421 gaaggatgttattagtgattcattttctttatgttatggtggtatggatgt-ggaggggg 479
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 263 gaaggatgttattagtgattcattttctttatgttatggtggtatggatgtgggaggggg 204
Query: 480 agcaatggttctg 492
|||||||||||||
Sbjct: 203 agcaatggttctg 191
Score = 228 bits (115), Expect = 2e-59
Identities = 129/131 (98%), Gaps = 2/131 (1%)
Strand = Plus / Minus
Query: 492 gtccttattataatattgagctgaaggaactacaagtggctgggaagcgattgaagttaa 551
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 gtccttattataatattgagctgaaggaactacaagtggctgggaagcgattgaagttaa 75
Query: 552 accctaaaatcttt-gacggaaagcatggaactgttttggatagtggaactacatatgc- 609
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74 accctaaaatctttagacggaaagcatggaactgttttggatagtggaactacatatgct 15
Query: 610 ttaccttccag 620
|||||||||||
Sbjct: 14 ttaccttccag 4