Jatropha Genome Database

JcCA0293441.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0293441.20 - phase: 0 /TE/partial
         (1107 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01506                                                             82   3e-15
KJC_c09568                                                             70   1e-11

>KJC_c01506 
          Length = 1883

 Score = 81.8 bits (41), Expect = 3e-15
 Identities = 230/293 (78%)
 Strand = Plus / Minus

                                                                       
Query: 91  atggtaaagtatctggctcttgatgaggctgacagaatgcttgatatgggatttgaacct 150
           ||||| |||||| |||| || |||||||| || || ||||| |||||||| ||||| || 
Sbjct: 659 atggtcaagtatttggccctagatgaggcagataggatgctggatatgggttttgagcca 600

                                                                       
Query: 151 cagattcggaagattgtccagcaaatggacatgcctccgccaggtgaaaggcaaactatg 210
           || ||  | || |||||  | ||||  ||||||||||  |||||||  || || || |||
Sbjct: 599 caaataagaaaaattgtggaacaaaatgacatgcctcgaccaggtgctagacagacaatg 540

                                                                       
Query: 211 ctttttagtgcaacttttccgcatgagatacagagtcttgcgtctgattttctttcagat 270
           ||||| ||||| || |||||  | ||||||||||| || || ||||||||| | |   ||
Sbjct: 539 cttttcagtgctacctttccaaaagagatacagaggctagcttctgattttttgtttaat 480

                                                                       
Query: 271 tatatttttcttactgttggaagagttggatcaagtactgatttgattgcacaaagggtt 330
           ||||| ||| |  |||| ||| |||| || |||||||| ||||||||||  ||||| |||
Sbjct: 479 tatatctttttggctgtcggacgagtgggctcaagtacagatttgattgttcaaagagtt 420

                                                                
Query: 331 gaacttgttcaagatgttgacaaaagaaaccaccttatggagcttcttcatgc 383
           ||| ||||||| ||   |||||||||||  ||||| ||||| |||||||||||
Sbjct: 419 gaatttgttcacgagtctgacaaaagaagtcacctcatggaccttcttcatgc 367



 Score = 63.9 bits (32), Expect = 8e-10
 Identities = 113/140 (80%)
 Strand = Plus / Minus

                                                                       
Query: 568 ccaattttggtggcaactgatgttgcttcacggggtctggatattccacatgtctcccat 627
           ||||| ||||| ||||||||||||||  |||| || || |||||||| |||||  | |||
Sbjct: 182 ccaatcttggtagcaactgatgttgcagcacgtggacttgatattcctcatgttgcacat 123

                                                                       
Query: 628 gtcgtcaattttgatctgccaaaagacatagatgactatgttcacaggataggccgaaca 687
           || ||||| |||||||| ||||| || || ||||| ||||| ||| | || || || |||
Sbjct: 122 gtggtcaactttgatctcccaaatgatattgatgattatgtccaccgtattggacggaca 63

                               
Query: 688 ggacgtgctggtaaatctgg 707
           ||||| ||||| ||| ||||
Sbjct: 62  ggacgagctggaaaaactgg 43


>KJC_c09568 
          Length = 643

 Score = 69.9 bits (35), Expect = 1e-11
 Identities = 53/59 (89%)
 Strand = Plus / Minus

                                                                      
Query: 109 cttgatgaggctgacagaatgcttgatatgggatttgaacctcagattcggaagattgt 167
           ||||||||||||||  |||||||||||||||| ||||||||||| ||||| || |||||
Sbjct: 563 cttgatgaggctgatcgaatgcttgatatgggttttgaacctcaaattcgtaaaattgt 505