Jatropha Genome Database

JcCA0287971.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0287971.10 + phase: 0 
         (657 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06251                                                            938   0.0  

>KJC_c06251 
          Length = 480

 Score =  938 bits (473), Expect = 0.0
 Identities = 480/481 (99%), Gaps = 1/481 (0%)
 Strand = Plus / Minus

                                                                       
Query: 147 gttcacacgagcaagaaacaaaagagcggctattcaatgtttgaagagaaagaggctata 206
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 gttcacacgagcaagaa-caaaagagcggctattcaatgtttgaagagaaagaggctata 422

                                                                       
Query: 207 tgaacaacaaatagaacagcttggaaatttccaactgcgtattcatgatcagatgataat 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tgaacaacaaatagaacagcttggaaatttccaactgcgtattcatgatcagatgataat 362

                                                                       
Query: 267 gttagaaggtgcaaaagccactacagaaactgtggacgcattgagaactggagcagctgc 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gttagaaggtgcaaaagccactacagaaactgtggacgcattgagaactggagcagctgc 302

                                                                       
Query: 327 aatgaaggcaatgcaaaaggcgacaaacatcgatgatgtggacaagaccatggatgagat 386
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aatgaaggcaatgcaaaaggcgacaaacatcgatgatgtggacaagaccatggatgagat 242

                                                                       
Query: 387 caatgagcagacggagaacatgaaacagatacaagaagcactggctactcctattggtgc 446
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 caatgagcagacggagaacatgaaacagatacaagaagcactggctactcctattggtgc 182

                                                                       
Query: 447 ggcagctgattttgatgaggatgaacttgaggcagaactcgaagagttggaaggtgctga 506
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ggcagctgattttgatgaggatgaacttgaggcagaactcgaagagttggaaggtgctga 122

                                                                       
Query: 507 attggaagaacagctccttcagcctgcaaccacagctccagcagctccagtgcaagttcc 566
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 attggaagaacagctccttcagcctgcaaccacagctccagcagctccagtgcaagttcc 62

                                                                       
Query: 567 agcaggcaggcaaccagctcgccctgttcctcaaaagcgcacagctgaggaagatgaact 626
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agcaggcaggcaaccagctcgccctgttcctcaaaagcgcacagctgaggaagatgaact 2

            
Query: 627 t 627
           |
Sbjct: 1   t 1