Jatropha Genome Database

JcCA0286251.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0286251.20 - phase: 0 
         (483 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05343                                                            406   e-113

>KJC_c05343 
          Length = 505

 Score =  406 bits (205), Expect = e-113
 Identities = 208/209 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcaagtaattcctcgaagtgcatctgaagctactttatatgatgggagggtgttagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 atgcaagtaattcctcgaagtgcatctgaagctactttatatgatgggagggtgttagaa 150

                                                                       
Query: 61  cgagttaaaggtgaaggcaaacagcacattacagaagaaggctcctcttctcagactgaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 149 cgagttaaaggtgaaggcaaacagcacattacagaagaaggctcctcttctcagactgaa 90

                                                                       
Query: 121 gaagatgtaaagggaagcagcatgacccttagggcaaaagattcaacagcagaaggtttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 89  gaagatgtaaagggaagcagcatgacccttagggcaaaagattcaacagcagaaggtttc 30

                                        
Query: 181 tcttttgatttttctgccataaagccagg 209
           ||||||||||||||||||||||| |||||
Sbjct: 29  tcttttgatttttctgccataaaaccagg 1