Jatropha Genome Database

JcCA0285281.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0285281.10 + phase: 0 /partial
         (388 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c10277                                                            595   e-170

>KJC_c10277 
          Length = 673

 Score =  595 bits (300), Expect = e-170
 Identities = 314/316 (99%), Gaps = 2/316 (0%)
 Strand = Plus / Plus

                                                                       
Query: 67  gtcgtcaccgtcaattgccccgacaaggccggcctcggctgcgatctctgccgtataatt 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gtcgtcaccgtcaattgccccgacaaggccggcctcggctgcgatctctgccgtataatt 60

                                                                       
Query: 127 ctcgagtttggcctttccatcactcgtgctgatttttcaacagatggaagatggtgttac 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctcgagtttggcctttccatcactcgtgctgatttttcaacagatggaagatggtgttac 120

                                                                       
Query: 187 atagtattttgggtggttccagactcgacctcttcatcacataagctcgattgggatagc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atagtattttgggtggttccagactcgacctcttcatcacataagctcgattgggatagc 180

                                                                       
Query: 247 ttgaaaaaccggctctcttttgcttcccctccctgtttgattccattctattttgatcag 306
           ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 181 ttgaaaaaccggctctc-tttgcttcccctccctgtttgattccattcta-tttgatcag 238

                                                                       
Query: 307 aaatctaatggtccgtcgttgcctcccctctatttgttgaaattttgttttgttgaccgg 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 239 aaatctaatggtccgtcgttgcctcccctctatttgttgaaattttgttttgttgaccgg 298

                           
Query: 367 aaaggattactacacg 382
           ||||||||||||||||
Sbjct: 299 aaaggattactacacg 314