Jatropha Genome Database

JcCA0284281.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0284281.10 + phase: 0 /partial
         (469 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05446                                                            741   0.0  
KJC_c08315                                                             54   3e-07

>KJC_c05446 
          Length = 717

 Score =  741 bits (374), Expect = 0.0
 Identities = 402/411 (97%), Gaps = 2/411 (0%)
 Strand = Plus / Minus

                                                                       
Query: 60  ctgtcagactaa-gactaaagccaaaggcatggcggaagaaagattcaaaatcaaaggga 118
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 714 ctgtcagactaaagactaaagccaaaggcatggcggaagaaagattcaaaatcaaaggga 655

                                                                       
Query: 119 aagtagtgttgatgaagaagaacgttttggacttcaatgatgttacagcttcatgttttg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 654 aagtagtgttgatgaagaagaacgttttggacttcaatgatgttacagcttcatgttttg 595

                                                                       
Query: 179 atcggattcatgagttgtttggcaaaggtgtctctatccaacttatcagtgccgtcaatc 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 594 atcggattcatgagttgtttggcaaaggtgtctctatccaacttatcagtgccgtcaatc 535

                                                                       
Query: 239 cagacccagagaatgatctgcgagggaagcatggaaaggtagcattcttggagagctggg 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 534 cagacccagagaatgatctgcgagggaagcatggaaaggtagcattcttggagagctggg 475

                                                                       
Query: 299 tnnnnnnnntaacaccgatggcagctcaagagacagaattcaatattacttttgactggg 358
           |        |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 474 t-aaaaaaataacaccgatggcagctcaagagacagaattcaatattacttttgactggg 416

                                                                       
Query: 359 atgaaagcatggctgttccaggagctttcataattagaaatcaccatcatagccagctat 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 atgaaagcatggctgttccaggagctttcataattagaaatcaccatcatagccagctat 356

                                                              
Query: 419 acctcaagacagtcacattagaagatgttcctggacatggtagggtacatt 469
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 acctcaagacagtcacattagaagatgttcctggacatggtagggtacatt 305


>KJC_c08315 
          Length = 582

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                       
Query: 127 ttgatgaagaagaacgttttggacttcaatgatgttacagcttcatgttttgatcggatt 186
           |||||||| ||||| ||||| |||||||||||| ||   ||||||  | |||||||  ||
Sbjct: 100 ttgatgaaaaagaatgttttagacttcaatgattttcatgcttcacttcttgatcgtgtt 159

                          
Query: 187 catgagttgtttggc 201
           |||||||||||||||
Sbjct: 160 catgagttgtttggc 174