Jatropha Genome Database

JcCA0282511.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0282511.10 + phase: 0 
         (1818 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02146                                                             64   1e-09

>KJC_c02146 
          Length = 1821

 Score = 63.9 bits (32), Expect = 1e-09
 Identities = 65/76 (85%)
 Strand = Plus / Minus

                                                                        
Query: 1515 gatcggaacggtcaaaggaatcaacggtggagctgtgaccaaatcagtatcttgtcatca 1574
            ||||||| || |||||||||||||||||||    || ||||| |||||||||||||| ||
Sbjct: 433  gatcggatcgatcaaaggaatcaacggtgggaaagttaccaagtcagtatcttgtcacca 374

                            
Query: 1575 aagcctgtatccttac 1590
            |||| |||| ||||||
Sbjct: 373  aagcttgtacccttac 358



 Score = 61.9 bits (31), Expect = 5e-09
 Identities = 40/43 (93%)
 Strand = Plus / Minus

                                                       
Query: 1762 attgaggtttgccattggatatttgagaatgatatgacttgga 1804
            |||||||| ||||| |||||||||||||||||| |||||||||
Sbjct: 187  attgaggtgtgccactggatatttgagaatgatttgacttgga 145