Jatropha Genome Database
- JcCA0277701.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0277701.10 - phase: 0 /pseudo/partial
(1395 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c01765 952 0.0
>KJC_c01765
Length = 1193
Score = 952 bits (480), Expect = 0.0
Identities = 487/488 (99%), Gaps = 1/488 (0%)
Strand = Plus / Plus
Query: 204 cctgccaactacttggatggtgaaaaatggtagttctggaggcagctcgaatgagcatcg 263
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 cctgccaactacttggatggtgaaaaatggtagttctggaggcagctcgaatgagcatcg 765
Query: 264 tggcaagttgaaagatattaatggtctctcagctgatgatttt-gacatgcctcaatctg 322
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 766 tggcaagttgaaagatattaatggtctctcagctgatgatttttgacatgcctcaatctg 825
Query: 323 ggacatgtcctcatgtagagtctgtaaatgtcactgatatttttctcaaaaattctgtcg 382
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 ggacatgtcctcatgtagagtctgtaaatgtcactgatatttttctcaaaaattctgtcg 885
Query: 383 ttgaagagacaacagaagttgttcaggatcatcttcaactggtgacttctgctgctccta 442
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 ttgaagagacaacagaagttgttcaggatcatcttcaactggtgacttctgctgctccta 945
Query: 443 ttgatagctgtaagaccttgaagtccaatgaggacatcagaatagattttcttgaagata 502
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 ttgatagctgtaagaccttgaagtccaatgaggacatcagaatagattttcttgaagata 1005
Query: 503 ttgttgaagctgctaaaaacaacaagaaaactttgtttttagcaatggagtcgagtatga 562
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1006 ttgttgaagctgctaaaaacaacaagaaaactttgtttttagcaatggagtcgagtatga 1065
Query: 563 acatgatgagacaagttgagcttcaagagaagcttgcagagcaagcaaaagaagaagctg 622
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1066 acatgatgagacaagttgagcttcaagagaagcttgcagagcaagcaaaagaagaagctg 1125
Query: 623 ctagtgcaggtttggatattctaaaaaaggtggaggaacttgaacagatgctgagacatg 682
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1126 ctagtgcaggtttggatattctaaaaaaggtggaggaacttgaacagatgctgagacatg 1185
Query: 683 caaaggag 690
||||||||
Sbjct: 1186 caaaggag 1193
Score = 359 bits (181), Expect = 1e-98
Identities = 181/181 (100%)
Strand = Plus / Plus
Query: 24 aggttgattggcgcattttaaaggctgttgctattgagcaccccaaagatgctaatgcag 83
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96 aggttgattggcgcattttaaaggctgttgctattgagcaccccaaagatgctaatgcag 155
Query: 84 ctgctgaatatgttgtttccgaggttcttcctaatcttccacgacagtccattcaaggtt 143
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 ctgctgaatatgttgtttccgaggttcttcctaatcttccacgacagtccattcaaggtt 215
Query: 144 ctcctcatgaggactgcagtacaggtggtgtcgcaggtggaagaagtaatataattgacg 203
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 ctcctcatgaggactgcagtacaggtggtgtcgcaggtggaagaagtaatataattgacg 275
Query: 204 c 204
|
Sbjct: 276 c 276