Jatropha Genome Database

JcCA0271341.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0271341.20 - phase: 2 /TE/partial
         (1854 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11978                                                            155   5e-37

>KJC_c11978 
          Length = 390

 Score =  155 bits (78), Expect = 5e-37
 Identities = 183/218 (83%)
 Strand = Plus / Plus

                                                                        
Query: 786  tcacctagggcatggtttgacagactcagtaaggccatgatttcctttggttacactcag 845
            |||||||| ||||||||||| ||| |||||||||||||||||||||| |||||  |||| 
Sbjct: 173  tcacctagagcatggtttgatagattcagtaaggccatgatttccttcggttattctcaa 232

                                                                        
Query: 846  agtaatgctaatcataccttatttatcagacactgtaacggtaagatcacattactcgtt 905
            ||||||||| |||||||||| ||||||||||||||||| | ||||||||| |||||  ||
Sbjct: 233  agtaatgctgatcataccttgtttatcagacactgtaatgttaagatcactttactaatt 292

                                                                        
Query: 906  gtatatgttgatgatatggttgtaacgggaaatgatgaagtagaagttgctcgcctgaag 965
            ||  || ||||||||||||  || ||  || |||||||||  ||  |||||||| | |||
Sbjct: 293  gtccattttgatgatatggccgtgactagagatgatgaagaggagattgctcgcttaaag 352

                                                  
Query: 966  aaacttttggcccaagagtttgagattaaggatttagg 1003
            ||  | ||||| || ||||||||||||||||| |||||
Sbjct: 353  aagttgttggctcaggagtttgagattaaggacttagg 390