Jatropha Genome Database

JcCA0271341.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0271341.10 - phase: 1 /pseudo/partial
         (237 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08288                                                            258   5e-69

>KJC_c08288 
          Length = 385

 Score =  258 bits (130), Expect = 5e-69
 Identities = 144/146 (98%), Gaps = 2/146 (1%)
 Strand = Plus / Minus

                                                                       
Query: 31  gttccttccatatatgagccatgtggactttcccaaatgcttggaatgcgatatggtgcg 90
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 385 gttccttccatatatgagccatgtggactttcccaaatgcttgga-tgcgatatggtgcg 327

                                                                       
Query: 91  gtaccattggttagaaagactgggtggccttgcagacacagtgtttgacatggacgatca 150
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 326 gtaccattggttagaaagactgg-tggccttgcagacacagtgtttgacatggacgatca 268

                                     
Query: 151 gtcaaaccatgagattgctaatgggt 176
           ||||||||||||||||||||||||||
Sbjct: 267 gtcaaaccatgagattgctaatgggt 242