Jatropha Genome Database

JcCA0269921.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0269921.10 - phase: 2 /pseudo/partial
         (1129 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03837                                                            121   4e-27

>KJC_c03837 
          Length = 1075

 Score =  121 bits (61), Expect = 4e-27
 Identities = 196/241 (81%)
 Strand = Plus / Minus

                                                                       
Query: 687 ttcaagtgctcaagttctatggaattccatattggatttttgtaatgtggctggactttg 746
           ||||| |||| ||| | |||||||| |||||||||  |||||| ||||||||||||||||
Sbjct: 281 ttcaattgcttaagctgtatggaatcccatattggggttttgttatgtggctggactttg 222

                                                                       
Query: 747 ttacttacctgcatcaccacggacatgaccaaaaacttccctggtaccggggcaaggaat 806
           | || ||| |||||||||| || |||||  | |||||||| |||||||| || || ||||
Sbjct: 221 taacgtacttgcatcaccatggtcatgaagagaaacttccttggtaccgcggaaacgaat 162

                                                                       
Query: 807 ggagttacctgagaggagggctaacaacagttgatcgcgattacggatttttcaacaaca 866
           |||||||  | || ||||| || || ||| ||||||| ||||| ||||   | || || |
Sbjct: 161 ggagttatttaaggggaggactgacgacacttgatcgtgattatggatggattaataata 102

                                                                       
Query: 867 tccaccatgatattggcacgcatgttattcatcatttgtttcctcaaatcccacactatc 926
           |||| ||||| ||||| || ||||||||||| || || |||||||||||||| || ||||
Sbjct: 101 tccatcatgacattggaacccatgttattcaccacttatttcctcaaatccctcattatc 42

            
Query: 927 a 927
           |
Sbjct: 41  a 41



 Score =  115 bits (58), Expect = 2e-25
 Identities = 182/222 (81%), Gaps = 1/222 (0%)
 Strand = Plus / Minus

                                                                       
Query: 232 tgggctgctcaagggacaatgttctgggctatctttgttcttggccatgattgtggccat 291
           ||||||||||| || |||||||| |||||| | ||||||||||||||||||||||| |||
Sbjct: 734 tgggctgctcagggaacaatgttttgggctctgtttgttcttggccatgattgtgggcat 675

                                                                       
Query: 292 ggaagtttttctgataattcactgctaaaataatatagtgggccatttcctgcattcttc 351
           ||||| |||||  | ||| |   |||||| || | | || || ||  | || ||||||||
Sbjct: 674 ggaagcttttcgaacaatcccaagctaaa-tagtgttgttgggcaccttcttcattcttc 616

                                                                       
Query: 352 cattcttgtaccttaccatggatggagaattagccataggactcaccaccaatatcatgg 411
            |||||||||||||| ||||||||||||||||||||||||||||| || ||| | |||||
Sbjct: 615 aattcttgtaccttatcatggatggagaattagccataggactcatcatcaaaaccatgg 556

                                                     
Query: 412 aaatgtagaaaaggatgaatcttgggttccgttacctgagaa 453
           | | || || || |||||||| |||  |||| | ||||||||
Sbjct: 555 acacgttgagaatgatgaatcatggcatccgctgcctgagaa 514