Jatropha Genome Database
- JcCA0267981.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0267981.10 - phase: 0 /partial
(1225 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c01503 2294 0.0
KJC_s16112 281 2e-75
>KJC_c01503
Length = 1274
Score = 2294 bits (1157), Expect = 0.0
Identities = 1171/1173 (99%), Gaps = 2/1173 (0%)
Strand = Plus / Plus
Query: 55 tccgatttaccggaatcagccactgaattctctctccctctcacctttcttgacttattt 114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tccgatttaccggaatcagccactgaattctctctccctctcacctttcttgacttattt 60
Query: 115 tggttaagattcccaccagttgaacgtctctttttctaccaacttaccgattcaactcct 174
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tggttaagattcccaccagttgaacgtctctttttctaccaacttaccgattcaactcct 120
Query: 175 tctttcttcaactcagttatcttacctaaactcaaactctccttctctctcactctcgtc 234
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tctttcttcaactcagttatcttacctaaactcaaactctccttctctctcactctcgtc 180
Query: 235 cactatctgcccttcgctggccacctcacatggccatcaaactctcctaagcccatcatc 294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 cactatctgcccttcgctggccacctcacatggccatcaaactctcctaagcccatcatc 240
Query: 295 ctttacactccaaacgatggcgttccattcacagtcgccgaatcagatgcggacatggat 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ctttacactccaaacgatggcgttccattcacagtcgccgaatcagatgcggacatggat 300
Query: 355 tatctttccagtgatgacatccgagttgccactgagttacatccatatgtgccggagtta 414
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tatctttccagtgatgacatccgagttgccactgagttacatccatatgtgccggagtta 360
Query: 415 ccgatatctgaaactagatcatctattattgcttttcaaatcactttatttccaaataaa 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ccgatatctgaaactagatcatctattattgcttttcaaatcactttatttccaaataaa 420
Query: 475 gggtttagcatcggttactccattaaccatgcagttcttgacggtcaaagtgtaaccatg 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gggtttagcatcggttactccattaaccatgcagttcttgacggtcaaagtgtaaccatg 480
Query: 535 tttatgaaagcttgggcttacatttctaaacacggtgaaagatctttattacctgaatta 594
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 tttatgaaagcttgggcttacatttctaaacacggtgaaagatctttattacctgaatta 540
Query: 595 tctccattttatgaacgaaatggtttacaagacccaaaagacctcgaatcgctgttcttg 654
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tctccattttatgaacgaaatggtttacaagacccaaaagacctcgaatcgctgttcttg 600
Query: 655 tctcagtggaattgcataactgagtccctgtcaagagacaatcctcgaagtttgaaagta 714
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tctcagtggaattgcataactgagtccctgtcaagagacaatcctcgaagtttgaaagta 660
Query: 715 ttgccccatgtagttgaagtgactaacaaggttcgatctacgtttaagttgagcaatgaa 774
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 ttgccccatgtagttgaagtgactaacaaggttcgatctacgtttaagttgagcaatgaa 720
Query: 775 gacttaaacaaaat-gaagaagaagattttgtctcaattggaggacccaattgatcattt 833
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gacttaaacaaaatagaagaagaagattttgtctcaattggaggacccaattgatcattt 780
Query: 834 atcagattttgtgattacatgtgcttatgtaatagtttgcatggtaaaagcaagaggagg 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781 atcagattttgtgattacatgtgcttatgtaatagtttgcatggtaaaagcaagaggagg 840
Query: 894 agatgaaaatagaaccgtttggttcttgtattctgtggattgccgaaaacgtttaaa-tc 952
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 841 agatgaaaatagaaccgtttggttcttgtattctgtggattgccgaaaacgtttaaattc 900
Query: 953 ctccacttccaagaaattattttggcaattgtattgctgttcatgaagtgattgcagtag 1012
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901 ctccacttccaagaaattattttggcaattgtattgctgttcatgaagtgattgcagtag 960
Query: 1013 cgagagatttcatggaagaaaatggattatggattactgcgaagagaattagtgaaagta 1072
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961 cgagagatttcatggaagaaaatggattatggattactgcgaagagaattagtgaaagta 1020
Query: 1073 taaaggcaatagagacaaatggagttcttgaaggagcagaagagaagctatcagttttca 1132
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 taaaggcaatagagacaaatggagttcttgaaggagcagaagagaagctatcagttttca 1080
Query: 1133 agagtatgaatgatggagtacaaatgattagtgttgctggatcaacccggtttggggttt 1192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 agagtatgaatgatggagtacaaatgattagtgttgctggatcaacccggtttggggttt 1140
Query: 1193 acgggtgtgattttgggtggggaaagcccaaaa 1225
|||||||||||||||||||||||||||||||||
Sbjct: 1141 acgggtgtgattttgggtggggaaagcccaaaa 1173
>KJC_s16112
Length = 340
Score = 281 bits (142), Expect = 2e-75
Identities = 159/162 (98%), Gaps = 2/162 (1%)
Strand = Plus / Plus
Query: 673 actgagtccctgtcaagagacaatcctcgaagtttgaaagtattgccccatgtagttgaa 732
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 actgagaccctgtcaagagacaatcctcgaagtttgaaagtattgccccatgtagttgaa 240
Query: 733 gtgactaacaaggttcgatctacgtttaagttgagcaatgaagacttaaacaaaatgaag 792
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 241 gtgactaacaaggttcgatctacgtttaagttgagcaatgaagacttaaac-aaatgaag 299
Query: 793 aagaagattttgtctcaattggaggacccaattgatcattta 834
|||||||||||| |||||||||||||||||||||||||||||
Sbjct: 300 aagaagattttg-ctcaattggaggacccaattgatcattta 340
Score = 250 bits (126), Expect = 7e-66
Identities = 126/126 (100%)
Strand = Plus / Plus
Query: 534 gtttatgaaagcttgggcttacatttctaaacacggtgaaagatctttattacctgaatt 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gtttatgaaagcttgggcttacatttctaaacacggtgaaagatctttattacctgaatt 60
Query: 594 atctccattttatgaacgaaatggtttacaagacccaaaagacctcgaatcgctgttctt 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atctccattttatgaacgaaatggtttacaagacccaaaagacctcgaatcgctgttctt 120
Query: 654 gtctca 659
||||||
Sbjct: 121 gtctca 126
Score = 127 bits (64), Expect = 7e-29
Identities = 64/64 (100%)
Strand = Plus / Minus
Query: 654 gtctcagtggaattgcataactgagtccctgtcaagagacaatcctcgaagtttgaaagt 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 gtctcagtggaattgcataactgagtccctgtcaagagacaatcctcgaagtttgaaagt 129
Query: 714 attg 717
||||
Sbjct: 128 attg 125