Jatropha Genome Database

JcCA0266291.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0266291.10 - phase: 0 /TE/partial
         (1119 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c01717                                                            228   2e-59

>KJC_c01717 
          Length = 3065

 Score =  228 bits (115), Expect = 2e-59
 Identities = 171/189 (90%), Gaps = 1/189 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcaataattataaatcaagnnttagaaataaacacagtatttttactttcacctcaga 60
           |||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 58  atgcaataatcataaatcaagccttagaaataaacacagtatttttactttcacctcaga 117

                                                                       
Query: 61  taaattatatggtaatactaggtactccatttataaatctcatcacaccttattcagtaa 120
           ||||||||||||||||| |||| |||||||||||||||||||||||||| |||||||| |
Sbjct: 118 taaattatatggtaatattaggcactccatttataaatctcatcacaccatattcagtta 177

                                                                       
Query: 121 aagaagattgtattaaattcaaaataagaaatagtagagctagattagaatttacagaaa 180
           |||| ||||||||||||||  |||||| |||| |||  |||  | |||||||||| ||||
Sbjct: 178 aagaggattgtattaaatt-taaataaaaaattgtaaggctcaactagaatttacggaaa 236

                    
Query: 181 aacctaaaa 189
           |||||||||
Sbjct: 237 aacctaaaa 245