Jatropha Genome Database

JcCA0265291.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0265291.10 - phase: 0 /pseudo/partial
         (496 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02034                                                            375   e-104

>KJC_c02034 
          Length = 907

 Score =  375 bits (189), Expect = e-104
 Identities = 203/205 (99%), Gaps = 2/205 (0%)
 Strand = Plus / Plus

                                                                       
Query: 124 gttgtcgcacctccttttgtttatatcgatcaggtgaagtcttcattaacagatagaatt 183
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gttgtcgcacctccttt-gtttatatcgatcaggtgaagtcttcattaacagatagaatt 59

                                                                       
Query: 184 gagatatctggtcaaaact-cttgggttagcaaaggaggggccttcacaggagaaatcag 242
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 60  gagatatctggtcaaaactacttgggttagcaaaggaggggccttcacaggagaaatcag 119

                                                                       
Query: 243 tgtggaacaactgaaagatattggctgcaagtgggttattcttgggcattctgagcgcag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 120 tgtggaacaactgaaagatattggctgcaagtgggttattcttgggcattctgagcgcag 179

                                    
Query: 303 gcatataattggtgaaaaagatgag 327
           |||||||||||||||||||||||||
Sbjct: 180 gcatataattggtgaaaaagatgag 204