Jatropha Genome Database

JcCA0262011.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0262011.10 + phase: 0 
         (525 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05271                                                            523   e-148
KJC_c04901                                                            135   1e-31

>KJC_c05271 
          Length = 361

 Score =  523 bits (264), Expect = e-148
 Identities = 264/264 (100%)
 Strand = Plus / Minus

                                                                       
Query: 262 gctggttcattgaagaatgtcttaggtctgttgagatcaatgtatgccttgatctgtttg 321
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gctggttcattgaagaatgtcttaggtctgttgagatcaatgtatgccttgatctgtttg 302

                                                                       
Query: 322 gaagaagattctgcatttcttcggtatggttacttatcaacagaaagtgctgctgctgta 381
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaagaagattctgcatttcttcggtatggttacttatcaacagaaagtgctgctgctgta 242

                                                                       
Query: 382 aggaaagaagtggcaaagctttgcagtgaattgcgaccgcatgcacttgccttggtcagt 441
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aggaaagaagtggcaaagctttgcagtgaattgcgaccgcatgcacttgccttggtcagt 182

                                                                       
Query: 442 tcgttcggcattcctgatgcttttctgagccccatagcatttaactggattgatgcaaat 501
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcgttcggcattcctgatgcttttctgagccccatagcatttaactggattgatgcaaat 122

                                   
Query: 502 tcttggtcctcggttaaacactag 525
           ||||||||||||||||||||||||
Sbjct: 121 tcttggtcctcggttaaacactag 98


>KJC_c04901 
          Length = 787

 Score =  135 bits (68), Expect = 1e-31
 Identities = 68/68 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaatggaccttgtcctgtcatcccatctcagctgacaagtgccatcctcagaagcagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 atgaatggaccttgtcctgtcatcccatctcagctgacaagtgccatcctcagaagcagc 779

                   
Query: 61  caattcca 68
           ||||||||
Sbjct: 780 caattcca 787