Jatropha Genome Database

JcCA0261271.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0261271.10 + phase: 0 
         (405 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09504                                                            404   e-113

>KJC_c09504 
          Length = 511

 Score =  404 bits (204), Expect = e-113
 Identities = 204/204 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgaccgaagtggccagctcagttgtgcacgaggtgctcggccctcgagtccaggatgtg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 92  atgaccgaagtggccagctcagttgtgcacgaggtgctcggccctcgagtccaggatgtg 151

                                                                       
Query: 61  gatcagccaattgtcgactacatcatcaacgttctagctgatgaggacttcgatttcggt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 152 gatcagccaattgtcgactacatcatcaacgttctagctgatgaggacttcgatttcggt 211

                                                                       
Query: 121 gaggaaggcgaaggtgcttttgaagctcttggtgaactcctcgtcggcgccggatgcgtc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 gaggaaggcgaaggtgcttttgaagctcttggtgaactcctcgtcggcgccggatgcgtc 271

                                   
Query: 181 tccgactttgaagagtgccgtctg 204
           ||||||||||||||||||||||||
Sbjct: 272 tccgactttgaagagtgccgtctg 295



 Score =  303 bits (153), Expect = 2e-82
 Identities = 162/164 (98%), Gaps = 1/164 (0%)
 Strand = Plus / Plus

                                                                       
Query: 207 aaaaccaacagtgcggagccttacagcacctataagaatgaatgatggaatggatgagga 266
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 aaaaccaacagtgcggagccttacagcacctataagaatgaatgatggaatggatgagga 405

                                                                       
Query: 267 ggtcccaaagaagaagcctgaggttatggaaggtcctgtgctgtccgagcgtgaccgtgc 326
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ggtcccaaagaagaagcctgaggttatggaaggtcctgtgctgtccgagcgtgaccgtgc 465

                                                       
Query: 327 aaagatagagaggagaaagagaaaggaggagcgccaaagagagg 370
           |||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 466 aaagatagagaggagaaagagaaaggnggagcg-caaagagagg 508