Jatropha Genome Database

JcCA0257171.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0257171.20 - phase: 0 /pseudo/partial
         (717 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c07930                                                            385   e-106

>KJC_c07930 
          Length = 304

 Score =  385 bits (194), Expect = e-106
 Identities = 203/206 (98%)
 Strand = Plus / Minus

                                                                       
Query: 285 tagaacagtacagcagatgatggagacgatggagagaatgatggaagacccttttgccta 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 tagaacagtacagcagatgatggagacgatggagagaatgatggaagacccttttgccta 233

                                                                       
Query: 345 tacggctacttggccatcagagccaccatcaccagttgaacgaagtgggtatagcagagg 404
           ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tacgggtaattggccatcagagccaccatcaccagttgaacgaagtgggtatagcagagg 173

                                                                       
Query: 405 aaggactccatgggagataaaagaaggagaaacagagtacaagatgagatttgacatgcc 464
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 gaggactccatgggagataaaagaaggagaaacagagtacaagatgagatttgacatgcc 113

                                     
Query: 465 tggaatgactaaagaagatgtgaagg 490
           ||||||||||||||||||||||||||
Sbjct: 112 tggaatgactaaagaagatgtgaagg 87



 Score =  101 bits (51), Expect = 2e-21
 Identities = 57/59 (96%)
 Strand = Plus / Minus

                                                                      
Query: 485 tgaaggcagagaaggtgcccgagaaaaataatgtcaatggtgcacaaaatggaatagag 543
           |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59  tgaaagcagaggaggtgcccgagaaaaataatgtcaatggtgcacaaaatggaatagag 1