Jatropha Genome Database

JcCA0254771.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0254771.20 + phase: 0 
         (300 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06717                                                            109   4e-24

>KJC_c06717 
          Length = 561

 Score =  109 bits (55), Expect = 4e-24
 Identities = 107/123 (86%), Gaps = 1/123 (0%)
 Strand = Plus / Plus

                                                                       
Query: 178 agggcatgtgggacttgctgtgcacgctgcaactgtgttccgccgggaacttccggcaac 237
           |||||||| ||||| |||||||| || ||||| |||||||||||||||||| |||| |||
Sbjct: 381 agggcatgcgggacatgctgtgcccgttgcaagtgtgttccgccgggaactgccggtaac 440

                                                                       
Query: 238 catgaggtctgcccctgctacgctagcttgactactcacggtggtcggcgcaagtgtcct 297
            |||||| ||||||||| ||||| ||||||||||| || ||| | || ||||||||||||
Sbjct: 441 tatgaggcctgcccctgttacgccagcttgactacccatggt-gccgacgcaagtgtcct 499

              
Query: 298 tga 300
           |||
Sbjct: 500 tga 502