Jatropha Genome Database

JcCA0254771.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0254771.10 + phase: 0 
         (312 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06717                                                            484   e-137

>KJC_c06717 
          Length = 561

 Score =  484 bits (244), Expect = e-137
 Identities = 254/256 (99%), Gaps = 1/256 (0%)
 Strand = Plus / Plus

                                                                       
Query: 57  ccattttgctgaggctgatcatcaaacggtcaagtcaaaactagacgcaactaattctcc 116
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 248 ccattttgctgaggctgatcattaaacggtcaagtcaaaactagacgcaactaattctcc 307

                                                                       
Query: 117 cgctgaggaaattgattgcggtagcgcttgcacagccaggtgtcagttatcgtcaaggcc 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cgctgaggaaattgattgcggtagcgcttgcacagccaggtgtcagttatcgtcaaggcc 367

                                                                       
Query: 177 aaacctatgcaagagggcatgcgggacatgctgtgcccgttgcaagtgtgttccgccggg 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aaacctatgcaagagggcatgcgggacatgctgtgcccgttgcaagtgtgttccgccggg 427

                                                                       
Query: 237 aactgccggtaactatgaggcctgcccctgttacgccagcttgactacccatggtggccg 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 428 aactgccggtaactatgaggcctgcccctgttacgccagcttgactacccatggt-gccg 486

                           
Query: 297 acgcaagtgtccttga 312
           ||||||||||||||||
Sbjct: 487 acgcaagtgtccttga 502