Jatropha Genome Database
- JcCA0254251.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0254251.10 + phase: 0
(594 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_s15279 111 2e-24
KJC_c00209 111 2e-24
KJC_c05851 72 2e-12
KJC_c04074 54 4e-07
KJC_c12907 50 6e-06
>KJC_s15279
Length = 453
Score = 111 bits (56), Expect = 2e-24
Identities = 137/164 (83%)
Strand = Plus / Plus
Query: 40 gatggggctgtgggaaagacttgcatgctcatttcctacactagcaatacctttccaccg 99
||||| ||||| || ||||||||||||||||| |||||||| ||||| || ||||| |
Sbjct: 114 gatggtgctgttggcaagacttgcatgctcatctcctacaccagcaacacttttcctact 173
Query: 100 gactatgttccgacagtgtttgacaatttcagtgctaatgtggtggtagatggtagtata 159
|||||||| || || ||||||||||| |||||||| |||||||| || ||||| || | |
Sbjct: 174 gactatgtgcctactgtgtttgacaacttcagtgcgaatgtggttgtggatgggagcaca 233
Query: 160 gttaatctcggattatgggacacagctgggcaggaagattataa 203
|| ||||| || || ||||| || ||||| ||||||||||||||
Sbjct: 234 gtcaatctagggttgtgggatactgctggccaggaagattataa 277
>KJC_c00209
Length = 1134
Score = 111 bits (56), Expect = 2e-24
Identities = 137/164 (83%)
Strand = Plus / Plus
Query: 40 gatggggctgtgggaaagacttgcatgctcatttcctacactagcaatacctttccaccg 99
||||| ||||| || ||||||||||||||||| |||||||| ||||| || ||||| |
Sbjct: 202 gatggtgctgttggcaagacttgcatgctcatctcctacaccagcaacacttttcctact 261
Query: 100 gactatgttccgacagtgtttgacaatttcagtgctaatgtggtggtagatggtagtata 159
|||||||| || || ||||||||||| |||||||| |||||||| || ||||| || | |
Sbjct: 262 gactatgtgcctactgtgtttgacaacttcagtgcgaatgtggttgtggatgggagcaca 321
Query: 160 gttaatctcggattatgggacacagctgggcaggaagattataa 203
|| ||||| || || ||||| || ||||| ||||||||||||||
Sbjct: 322 gtcaatctagggttgtgggatactgctggccaggaagattataa 365
>KJC_c05851
Length = 500
Score = 71.9 bits (36), Expect = 2e-12
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 472 tgcagttccaaaactcaacagaatgtgaaggctgtgtttgattctgcaataaaagtagtt 531
||||| || ||||||||||||||||| |||||||| |||||| ||||||| |||||||||
Sbjct: 342 tgcagctcaaaaactcaacagaatgttaaggctgtttttgatgctgcaatcaaagtagtt 283
>KJC_c04074
Length = 506
Score = 54.0 bits (27), Expect = 4e-07
Identities = 70/83 (84%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 52 ggaaagacttgcatgctcatttcc-tacactagcaatacctttccaccggactatgttcc 110
|||||||| |||||||| |||||| ||||| ||||| ||||| || |||| ||||| ||
Sbjct: 394 ggaaagacctgcatgcttatttccctacaccagcaacaccttccctacggattatgtacc 453
Query: 111 gacagtgtttgacaatttcagtg 133
|| || ||||||||||||||||
Sbjct: 454 aactgtttttgacaatttcagtg 476
>KJC_c12907
Length = 662
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 52 ggaaagacttgcatgctcatttcctacactagcaatacctt 92
|||||||| |||||||| ||||||||||| ||||| |||||
Sbjct: 160 ggaaagacctgcatgcttatttcctacaccagcaacacctt 120