Jatropha Genome Database

JcCA0254131.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0254131.20 + phase: 0 /partial
         (1272 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02900                                                            490   e-138

>KJC_c02900 
          Length = 1210

 Score =  490 bits (247), Expect = e-138
 Identities = 273/278 (98%), Gaps = 4/278 (1%)
 Strand = Plus / Minus

                                                                        
Query: 999  gatgaatgcg-atctgtccaattttg--acttcag-agggctgtgaaggtgaactttctg 1054
            |||||||||| ||||||||||||||   ||||||| ||||||||||||||||||||||||
Sbjct: 1210 gatgaatgcgtatctgtccaattttagtacttcaggagggctgtgaaggtgaactttctg 1151

                                                                        
Query: 1055 ggggagcacattatccattgttaatagatattgaaggtataagacacccattacttattg 1114
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1150 ggggagcacattatccattgttaatagatattgaaggtataagacacccattacttattg 1091

                                                                        
Query: 1115 ggtcatctcaaagaagtttgtctgatttccttggttccaattctcagaattcaactgaat 1174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1090 ggtcatctcaaagaagtttgtctgatttccttggttccaattctcagaattcaactgaat 1031

                                                                        
Query: 1175 tgaattatggagatggtgtaatggctactgaaaggttgtcagaaactgtatctgaatttc 1234
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1030 tgaattatggagatggtgtaatggctactgaaaggttgtcagaaactgtatctgaatttc 971

                                                  
Query: 1235 ctgtgccaataaacattaaagtggaatgtggaaccaaa 1272
            ||||||||||||||||||||||||||||||||||||||
Sbjct: 970  ctgtgccaataaacattaaagtggaatgtggaaccaaa 933