Jatropha Genome Database

JcCA0251221.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0251221.10 - phase: 1 /pseudo/partial
         (719 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c12386                                                            585   e-167

>KJC_c12386 
          Length = 463

 Score =  585 bits (295), Expect = e-167
 Identities = 309/311 (99%), Gaps = 2/311 (0%)
 Strand = Plus / Plus

                                                                       
Query: 411 gagaatgatggtcaagtgtcggaaagtttctgtaagatcctaaaggaattcctcagttct 470
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gagaatgatggtcaagtgtcggaaagtttctgtaagatcctaaaggaattcctcagttct 60

                                                                       
Query: 471 gctgaaagtgaagtgagatctttggctttacttt-attctacagtgggtagaaatgcaga 529
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 61  gctgaaagtgaagtgagatctttggctttacttttattctacagtgggtagaaatgcaga 120

                                                                       
Query: 530 tgcattggctctttattttggggaagaccctgctcgatgcccatttgagcaagtagtgtc 589
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgcattggctctttattttggggaagaccctgctcgatgcccatttgagcaagtagtgtc 180

                                                                       
Query: 590 tactctgctaaatttcgtgaggatgttttcccgagcacacgaggaaaactgcaagcagct 649
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tactctgctaaatttcgtgaggatgttttcccgagcacacgaggaaaactgcaagcagct 240

                                                                       
Query: 650 tgagtttgaaagg-aaaaagcagagagggatgcagaaaatgaaaagttgaggatgggtgc 708
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tgagtttgaaaggaaaaaagcagagagggatgcagaaaatgaaaagttgaggatgggtgc 300

                      
Query: 709 ctccaaaaggg 719
           |||||||||||
Sbjct: 301 ctccaaaaggg 311