Jatropha Genome Database

JcCA0249841.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0249841.10 + phase: 0 /partial
         (876 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c11781                                                           1003   0.0  

>KJC_c11781 
          Length = 534

 Score = 1003 bits (506), Expect = 0.0
 Identities = 524/528 (99%), Gaps = 2/528 (0%)
 Strand = Plus / Plus

                                                                       
Query: 283 gttaagcactcatcatggggtgttaaggtcaaaggccttgttgctgacaccaaaaagaat 342
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   gttaagcactcatcatggggtgttaaggtcaaaggccttgttgctgacaccaaaaagaat 60

                                                                       
Query: 343 cattttatggcccatcgagctgagaccctcttacagagcctaaggcttcgcttccccggc 402
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cattttatggcccatcgagctgagaccctcttacagagcctaaggcttcgcttccccggc 120

                                                                       
Query: 403 cttccacagacagcattggatatgaacaagattcaatataacaaggacgttggacagtcg 462
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cttccacagacagcattggatatgaacaagattcaatataacaaggacgttggacagtcg 180

                                                                       
Query: 463 attcttgaaagctactcgagagtaatggaaagcttggccttcaacattatggcaaggata 522
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 attcttgaaagctactcgagagtaatggaaagcttggccttcaacattatggcaaggata 240

                                                                       
Query: 523 gatgatgttctgtttgtagacgatgcctccaaacgatgtgctgcagcagaatcaatgtcc 582
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gatgatgttctg-ttgtagacgatgcctccaaacgatgtgctgcagcagaatcaatgtcc 299

                                                                       
Query: 583 ctattcaatcggaatgggttgggtggtcttcctattcagaagcggatgtcacctagcccc 642
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 ctattcaatcggaatgggttgggtggtcttcctattcagaagcggatgtcacctagcccc 359

                                                                       
Query: 643 ttctccatccaacacagcccattcgcctctccatttgcaactccaactttctgttcttcc 702
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 ttntccatccaacacagcccattcgcctctccatttgcaactccaactttctgttcttcc 419

                                                                       
Query: 703 actccagtggctggaagcccagctagagcaccatcctctctaaataggaacaacgtgaag 762
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 420 actccagtggctggaagcccagctagagcaccatcctctctaaat-ggaacaacgtgaag 478

                                                           
Query: 763 gaagcaatcgatcagaagttagagaaaccatatgcagctgactttgag 810
           ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 479 gaagcaatcgatcagaagttagagaaaccntatgcagctgactttgag 526