Jatropha Genome Database

JcCA0246931.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0246931.10 - phase: 0 /partial
         (417 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c04505                                                            519   e-147
KJC_c00736                                                             70   5e-12

>KJC_c04505 
          Length = 509

 Score =  519 bits (262), Expect = e-147
 Identities = 290/298 (97%), Gaps = 1/298 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgcttatactgtcacacccagcaattggaggatttgtgacgcattgtggatggaattca 60
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 atgctaatactgtcacacccagcaattggaggatttgtgacgcattgtggatggaattca 239

                                                                       
Query: 61  acattggaagcaataagctcaggtgtgccgatggctacatggccactttttgcatatcaa 120
           | |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 238 atattggaagcaataagctcaggtgtgccgatggctacatggccactttttgcagatcaa 179

                                                                       
Query: 121 tttattaatgagaagctagttattcaggtactgaagattggtgtgagttttggggtcgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 tttattaatgagaagctagttattcaggtactgaagattggtgtgagttttggggtcgag 119

                                                                       
Query: 181 gttccagagaagttcggagaggaaggaaagtttggtctgttggtgaaaaaagaagatgtt 240
           |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 118 gttccagagaagttcggagaggaagggaagtttggtctgttggtga-aaaagaagatgtt 60

                                                                     
Query: 241 gtaagaactttggacaagttgatgaaagaaggagaagaaagggaagagagaaataaaa 298
           || ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 59  gtgagagctttggacaagttgatggaagaaggagaagaaagggaagagagaaataaaa 2


>KJC_c00736 
          Length = 1204

 Score = 69.9 bits (35), Expect = 5e-12
 Identities = 41/43 (95%)
 Strand = Plus / Minus

                                                      
Query: 21  agcaattggaggatttgtgacgcattgtggatggaattcaaca 63
           |||| |||||||||||||||| |||||||||||||||||||||
Sbjct: 400 agcagttggaggatttgtgactcattgtggatggaattcaaca 358