Jatropha Genome Database

JcCA0246001.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0246001.10 + phase: 1 /pseudo/partial
         (305 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06652                                                            222   4e-58

>KJC_c06652 
          Length = 509

 Score =  222 bits (112), Expect = 4e-58
 Identities = 112/112 (100%)
 Strand = Plus / Plus

                                                                       
Query: 172 cgagtttaacggcgttgtctcctttggatgggcggtattggggtaaagtgaaagacttgt 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   cgagtttaacggcgttgtctcctttggatgggcggtattggggtaaagtgaaagacttgt 60

                                                               
Query: 232 ctcctcatatgagtgaatatgggctaatcttttatcgggttctagttgaggt 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ctcctcatatgagtgaatatgggctaatcttttatcgggttctagttgaggt 112