Jatropha Genome Database
- JcCA0242371.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0242371.10 - phase: 0 /pseudo/partial
(441 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c00209 297 1e-80
KJC_c04074 293 2e-79
KJC_c12907 232 6e-61
KJC_s15279 190 2e-48
KJC_c11097 188 8e-48
>KJC_c00209
Length = 1134
Score = 297 bits (150), Expect = 1e-80
Identities = 300/350 (85%)
Strand = Plus / Plus
Query: 1 atgagtgcctctaggttcattaagtgcgtcaccgtcggcgatggtgccgtcggaaagacc 60
|||||||| |||||||||||||| |||||||| || || |||||||| || || |||||
Sbjct: 163 atgagtgcttctaggttcattaaatgcgtcacagttggtgatggtgctgttggcaagact 222
Query: 61 tgcatgcttatttcctacaccagcaacaccttccctacggattatgtaccaactgttttt 120
|||||||| || ||||||||||||||||| || ||||| || ||||| || ||||| |||
Sbjct: 223 tgcatgctcatctcctacaccagcaacacttttcctactgactatgtgcctactgtgttt 282
Query: 121 gacaatttcagtgcaaatgtggttgtggatgggagcactgttaatctaggattatgggat 180
||||| |||||||| ||||||||||||||||||||||| || |||||||| || ||||||
Sbjct: 283 gacaacttcagtgcgaatgtggttgtggatgggagcacagtcaatctagggttgtgggat 342
Query: 181 actgctggtcaggaggattacaatcgattaagacctttaagctatcgaggtgcagatgtc 240
|||||||| ||||| ||||| ||| ||||||||||||| |||||||| || || |||||
Sbjct: 343 actgctggccaggaagattataatagattaagacctttgagctatcgtggggctgatgtt 402
Query: 241 tttattctggcattctctttaatcagcaaggccagctatgaaaatgttgccaaaaagtgg 300
|| | || || |||||| | || ||||||||||| |||||||||||||| || ||||||
Sbjct: 403 ttcttgcttgctttctctctcattagcaaggccagttatgaaaatgttgcaaagaagtgg 462
Query: 301 attcctgaactgaagcattatgcacctggagttccggttattcttgttgg 350
||||||||| ||| |||||||||||||||||| || |||| ||||||||
Sbjct: 463 attcctgaattgaggcattatgcacctggagtaccaattatccttgttgg 512
>KJC_c04074
Length = 506
Score = 293 bits (148), Expect = 2e-79
Identities = 162/164 (98%), Gaps = 2/164 (1%)
Strand = Plus / Plus
Query: 1 atgagtgcctctaggttcattaagtgcgtcaccgtcggcgatggtgccgtcggaaagacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 atgagtgcctctaggttcattaagtgcgtcaccgtcggcgatggtgccgtcggaaagacc 402
Query: 61 tgcatgcttattt-cctacaccagcaacaccttccctacggattatgtaccaactgtttt 119
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 403 tgcatgcttatttccctacaccagcaacaccttccctacggattatgtaccaactgtttt 462
Query: 120 tgacaatttcagtg-caaatgtggttgtggatgggagcactgtt 162
|||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 463 tgacaatttcagtgacaaatgtggttgtggatgggagcactgtt 506
>KJC_c12907
Length = 662
Score = 232 bits (117), Expect = 6e-61
Identities = 120/121 (99%)
Strand = Plus / Minus
Query: 1 atgagtgcctctaggttcattaagtgcgtcaccgtcggcgatggtgccgtcggaaagacc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 211 atgagtgcctctaggttcattaagtgcgtcaccgtcggcgatggtgccgtcggaaagacc 152
Query: 61 tgcatgcttatttcctacaccagcaacaccttccctacggattatgtaccaactgttttt 120
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 151 tgcatgcttatttcctacaccagcaacaccttccctacggattatgtacccactgttttt 92
Query: 121 g 121
|
Sbjct: 91 g 91
Score = 93.7 bits (47), Expect = 3e-19
Identities = 54/55 (98%), Gaps = 1/55 (1%)
Strand = Plus / Minus
Query: 283 aatgttgccaaaaagtggattcctgaactgaagcattatgcacctggagttccgg 337
||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 54 aatgttgccaaaa-gtggattcctgaactgaagcattatgcacctggagttccgg 1
Score = 91.7 bits (46), Expect = 1e-18
Identities = 46/46 (100%)
Strand = Plus / Plus
Query: 251 cattctctttaatcagcaaggccagctatgaaaatgttgccaaaaa 296
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51 cattctctttaatcagcaaggccagctatgaaaatgttgccaaaaa 96
>KJC_s15279
Length = 453
Score = 190 bits (96), Expect = 2e-48
Identities = 174/200 (87%)
Strand = Plus / Plus
Query: 1 atgagtgcctctaggttcattaagtgcgtcaccgtcggcgatggtgccgtcggaaagacc 60
|||||||| |||||||||||||| |||||||| || || |||||||| || || |||||
Sbjct: 75 atgagtgcttctaggttcattaaatgcgtcacagttggtgatggtgctgttggcaagact 134
Query: 61 tgcatgcttatttcctacaccagcaacaccttccctacggattatgtaccaactgttttt 120
|||||||| || ||||||||||||||||| || ||||| || ||||| || ||||| |||
Sbjct: 135 tgcatgctcatctcctacaccagcaacacttttcctactgactatgtgcctactgtgttt 194
Query: 121 gacaatttcagtgcaaatgtggttgtggatgggagcactgttaatctaggattatgggat 180
||||| |||||||| ||||||||||||||||||||||| || |||||||| || ||||||
Sbjct: 195 gacaacttcagtgcgaatgtggttgtggatgggagcacagtcaatctagggttgtgggat 254
Query: 181 actgctggtcaggaggatta 200
|||||||| ||||| |||||
Sbjct: 255 actgctggccaggaagatta 274
>KJC_c11097
Length = 519
Score = 188 bits (95), Expect = 8e-48
Identities = 221/263 (84%)
Strand = Plus / Plus
Query: 13 aggttcattaagtgcgtcaccgtcggcgatggtgccgtcggaaagacctgcatgcttatt 72
||||| || ||||||||||| ||||| ||||||||||| || || || || | | |||
Sbjct: 222 aggtttatcaagtgcgtcacggtcggtgatggtgccgttggtaaaacttgtctcttgatt 281
Query: 73 tcctacaccagcaacaccttccctacggattatgtaccaactgtttttgacaatttcagt 132
|| |||||||||||||| || ||||||||||| || ||||||||||||||||||||||||
Sbjct: 282 tcttacaccagcaacacttttcctacggattacgtgccaactgtttttgacaatttcagt 341
Query: 133 gcaaatgtggttgtggatgggagcactgttaatctaggattatgggatactgctggtcag 192
|||||||| ||||| |||| ||||||||||| || ||||| |||||||||||||| ||
Sbjct: 342 gcaaatgtagttgtcaatggaagcactgttaacctgggattgtgggatactgctgggcaa 401
Query: 193 gaggattacaatcgattaagacctttaagctatcgaggtgcagatgtctttattctggca 252
|||||||| ||| | ||||||||||| || ||||| || || ||||| || || |||||
Sbjct: 402 gaggattataataggttaagacctttgagttatcgtggagctgatgttttcatactggcc 461
Query: 253 ttctctttaatcagcaaggccag 275
|||||| | || |||||||||||
Sbjct: 462 ttctctctcattagcaaggccag 484