Jatropha Genome Database
- JcCA0242131.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0242131.10 + phase: 1 /TE/partial
(1426 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c01802 113 1e-24
KJC_c01045 96 3e-19
KJC_c02456 92 4e-18
KJC_c06567 90 2e-17
KJC_c01072 84 1e-15
>KJC_c01802
Length = 2243
Score = 113 bits (57), Expect = 1e-24
Identities = 81/89 (91%)
Strand = Plus / Minus
Query: 1229 attacaaagagaatgactgccattgaggaaatggctggaatggatgtgctttgcagtgac 1288
||||| |||||||||||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct: 1660 attactaagagaatgactgccattgaagaaatggctggtatggatgttctttgcagtgac 1601
Query: 1289 aaaacgggcacattgacacttaacaagct 1317
||||| || || |||||||| ||||||||
Sbjct: 1600 aaaactgggaccttgacactcaacaagct 1572
Score = 99.6 bits (50), Expect = 2e-20
Identities = 122/146 (83%)
Strand = Plus / Minus
Query: 534 cagtctgcacttactggagaatcacttccagtaaccaagaatcctggtgatggagtttac 593
|||||||| |||||||||||||||||||| || || ||||||||||| |||| ||||| |
Sbjct: 2056 cagtctgcccttactggagaatcacttcctgtgacaaagaatcctggggatgaagttttc 1997
Query: 594 tcgggttcaacgtgtaagcagggtgaaattgaagcagtggtcattgcaactggtgttcac 653
|| ||||| || || || || || ||||||||||| || || || || ||||| ||||||
Sbjct: 1996 tccggttccacttgcaaacaaggagaaattgaagctgttgttatagccactggagttcac 1937
Query: 654 acattttttgggaaggcagctcatct 679
|| || ||||||||||| || |||||
Sbjct: 1936 actttctttgggaaggctgcgcatct 1911
Score = 60.0 bits (30), Expect = 2e-08
Identities = 48/54 (88%)
Strand = Plus / Minus
Query: 295 atcattcctgctgatgcacgtcttcttgaaggagatcctttaaagattgatcag 348
||||| ||||||||||| ||||||||||| || ||||| || ||||||||||||
Sbjct: 2107 atcatccctgctgatgctcgtcttcttgagggtgatcccttgaagattgatcag 2054
>KJC_c01045
Length = 3058
Score = 95.6 bits (48), Expect = 3e-19
Identities = 93/108 (86%)
Strand = Plus / Minus
Query: 1221 agggcgcaattacaaagagaatgactgccattgaggaaatggctggaatggatgtgcttt 1280
||||||||||||| ||||||||||| ||||||||||||||||| || |||||||| || |
Sbjct: 1977 agggcgcaattaccaagagaatgacagccattgaggaaatggcaggcatggatgttctct 1918
Query: 1281 gcagtgacaaaacgggcacattgacacttaacaagctcaccgtggaca 1328
|||||||||| || || || |||| || |||||||| ||||| ||||
Sbjct: 1917 gcagtgacaagactggaactctgaccctgaacaagctgaccgttgaca 1870
Score = 85.7 bits (43), Expect = 3e-16
Identities = 73/83 (87%)
Strand = Plus / Minus
Query: 600 tcaacgtgtaagcagggtgaaattgaagcagtggtcattgcaactggtgttcacacattt 659
||||||||||||||||||||||||||||| || || ||||| |||||||| || || |||
Sbjct: 2299 tcaacgtgtaagcagggtgaaattgaagcggttgttattgccactggtgtgcataccttt 2240
Query: 660 tttgggaaggcagctcatctggt 682
||||| || || |||||||||||
Sbjct: 2239 tttggtaaagctgctcatctggt 2217
Score = 63.9 bits (32), Expect = 1e-09
Identities = 77/92 (83%)
Strand = Plus / Minus
Query: 256 ttggtgcctggggacattattagtatcaaacttggtgacatcattcctgctgatgcacgt 315
||||| ||||| |||||||| || || ||| | || || || ||||| |||||||| |||
Sbjct: 2455 ttggttcctggagacattatcagcattaaattgggagatataattcccgctgatgcccgt 2396
Query: 316 cttcttgaaggagatcctttaaagattgatca 347
|||||||| || |||||||||||| |||||||
Sbjct: 2395 cttcttgagggtgatcctttaaaggttgatca 2364
>KJC_c02456
Length = 1198
Score = 91.7 bits (46), Expect = 4e-18
Identities = 88/102 (86%)
Strand = Plus / Plus
Query: 1232 acaaagagaatgactgccattgaggaaatggctggaatggatgtgctttgcagtgacaaa 1291
||||||||||||||||| ||||| |||||||| || |||||||||||||||||||||||
Sbjct: 906 acaaagagaatgactgcaattgaagaaatggcaggcatggatgtgctttgcagtgacaag 965
Query: 1292 acgggcacattgacacttaacaagctcaccgtggacaaaaat 1333
|| || || |||||| | ||||| || || || |||||||||
Sbjct: 966 acaggaactttgacattaaacaaacttactgttgacaaaaat 1007
Score = 69.9 bits (35), Expect = 2e-11
Identities = 116/143 (81%)
Strand = Plus / Plus
Query: 534 cagtctgcacttactggagaatcacttccagtaaccaagaatcctggtgatggagtttac 593
||||||||||||||||| || || ||||| ||||| || ||||| ||||| || |||
Sbjct: 507 cagtctgcacttactggtgagtcccttcctgtaacaaaaggacctggagatggcgtgtac 566
Query: 594 tcgggttcaacgtgtaagcagggtgaaattgaagcagtggtcattgcaactggtgttcac 653
|| ||||| || |||||||| || || |||||||| ||||| ||||| || ||||| ||
Sbjct: 567 tcaggttctacttgtaagcaaggagagattgaagctgtggttattgctaccggtgtccat 626
Query: 654 acattttttgggaaggcagctca 676
|| || ||||||||||| |||||
Sbjct: 627 accttctttgggaaggctgctca 649
Score = 63.9 bits (32), Expect = 1e-09
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 42 attgaggaaaacaatgctggcaatgcagctgctgcccttatggctcgg 89
|||||||||||||||||||| ||||| |||||||| || |||||||||
Sbjct: 309 attgaggaaaacaatgctggtaatgctgctgctgctctcatggctcgg 356
Score = 61.9 bits (31), Expect = 4e-09
Identities = 76/91 (83%)
Strand = Plus / Plus
Query: 221 gagatggaaagtggagtgaggaagatgcttcagtgttggtgcctggggacattattagta 280
||||||||| ||||| |||| |||||||| | | || || ||||| ||||||||||||
Sbjct: 382 gagatggaaggtggactgagcaagatgctgctattttagttcctggtgacattattagtg 441
Query: 281 tcaaacttggtgacatcattcctgctgatgc 311
|||||||||| || || ||||| ||||||||
Sbjct: 442 tcaaacttggcgatattattccagctgatgc 472
>KJC_c06567
Length = 563
Score = 89.7 bits (45), Expect = 2e-17
Identities = 60/65 (92%)
Strand = Plus / Minus
Query: 1229 attacaaagagaatgactgccattgaggaaatggctggaatggatgtgctttgcagtgac 1288
||||||||||| |||||||| ||||| |||||||| ||||||||||| ||||||||||||
Sbjct: 414 attacaaagaggatgactgcaattgaagaaatggcaggaatggatgtcctttgcagtgac 355
Query: 1289 aaaac 1293
|||||
Sbjct: 354 aaaac 350
>KJC_c01072
Length = 1749
Score = 83.8 bits (42), Expect = 1e-15
Identities = 78/90 (86%)
Strand = Plus / Plus
Query: 21 atcaattccaccatcagtttcattgaggaaaacaatgctggcaatgcagctgctgccctt 80
|||||||| || || ||||| || ||||| ||||||||||| ||||| |||||||| |||
Sbjct: 297 atcaattctactataagttttatagaggagaacaatgctggtaatgctgctgctgctctt 356
Query: 81 atggctcggttggctcccaaagccaaggtc 110
|||||||| | ||||||||||||||||||
Sbjct: 357 atggctcgtcttgctcccaaagccaaggtc 386
Score = 61.9 bits (31), Expect = 4e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 286 cttggtgacatcattcctgctgatgcacgtcttcttgaaggagatcctttaaagattgat 345
||||| ||||| |||||||| |||||| | ||||||||||||||||| || || ||||||
Sbjct: 456 cttggggacattattcctgcagatgcaagacttcttgaaggagatccattgaaaattgat 515
Query: 346 cag 348
|||
Sbjct: 516 cag 518