Jatropha Genome Database

JcCA0240711.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0240711.10 - phase: 0 /partial
         (378 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00385                                                            165   9e-41

>KJC_c00385 
          Length = 1284

 Score =  165 bits (83), Expect = 9e-41
 Identities = 284/351 (80%)
 Strand = Plus / Minus

                                                                        
Query: 28   gtcactggcgctgctgggcaaataggctatgctattgttccaatgattgctagaggagtc 87
            |||||||| ||||| || ||||| || |||||  |||| || ||||||||||| ||||||
Sbjct: 1174 gtcactggggctgcaggacaaattggatatgcgcttgtccccatgattgctaggggagtc 1115

                                                                        
Query: 88   atgctaggccctgatcaacctgtaattctgcacatgcttgatattgaacctgcagctgag 147
            ||||| ||  |||| |||||||| || || ||| ||||||||||   ||||||||| |||
Sbjct: 1114 atgcttggtactgaccaacctgtcatcctccacttgcttgatatcccacctgcagcagag 1055

                                                                        
Query: 148  gccttgaacggggtgaaaatggaaatgatagatgcagcctttcctctgctaaaaggagtt 207
            || ||||| || ||||| |||||  || | |||||||| |||||||| || ||||| |||
Sbjct: 1054 gcattgaatggtgtgaagatggagttggttgatgcagcttttcctcttcttaaaggtgtt 995

                                                                        
Query: 208  attgctactactgatgttgttgaagcatgcatgggagtcaatgttgcggttatggttggt 267
             ||||||| ||||| |||||||| || ||||  || || ||  |||| || |||||||||
Sbjct: 994  gttgctacaactgacgttgttgaggcttgcactggggtaaacattgctgtcatggttggt 935

                                                                        
Query: 268  gggtttccacgaaaagaaggtatggagagaaaggatgtgatgtctaaaaatgtatctatt 327
            || || ||  | |||||||| ||||||||||| ||||||||||| |||||||| || || 
Sbjct: 934  ggcttccctaggaaagaaggaatggagagaaaagatgtgatgtcaaaaaatgtgtcaatc 875

                                                               
Query: 328  tacaaggctcaggcttcagcattggagaagcatgctgctgcagattgcaag 378
            |||||| | |||||||| ||  | ||||||||||| |||||| | ||||||
Sbjct: 874  tacaagtcccaggcttctgccctagagaagcatgcagctgcaaactgcaag 824