Jatropha Genome Database

JcCA0233921.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0233921.10 - phase: 0 /pseudo/partial
         (1236 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03921                                                            299   8e-81

>KJC_c03921 
          Length = 543

 Score =  299 bits (151), Expect = 8e-81
 Identities = 195/209 (93%), Gaps = 8/209 (3%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatgcttgacatgctttttgtgttatcatctcattctcttgctgagagtatttatttact 60
           |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 209 gatgtttgacatgctttttgtgttatcatcccattctcttgctgagagtatttatttact 150

                                                                       
Query: 61  tgataaccactgtaaacaattgacggacaaagaacgagtcaaagtcaaagaacgtattaa 120
           |||||| ||||||||||||||||||||||||||||||||  ||||||||| |||||||||
Sbjct: 149 tgataatcactgtaaacaattgacggacaaagaacgagttgaagtcaaag-acgtattaa 91

                                                                       
Query: 121 tcctgagttga-------gatgaatggttatatatccccttgctctggagatactcaacc 173
           |||||| ||||       ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 90  tcctgaattgagtgatgggatgaatggttatatatccccttgctctggagatactcaacc 31

                                        
Query: 174 tcctatattcaggtctccagttgtaggca 202
           |||||||||||||||||||||||||||||
Sbjct: 30  tcctatattcaggtctccagttgtaggca 2