Jatropha Genome Database

JcCA0224481.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0224481.10 - phase: 1 /pseudo/partial
         (1001 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05884                                                            757   0.0  

>KJC_c05884 
          Length = 657

 Score =  757 bits (382), Expect = 0.0
 Identities = 406/410 (99%), Gaps = 3/410 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atatactgattttcacatgacatcaagtccgacagccgagcaaatagttaactatctaat 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 251 atatactgattttcacatgacatcaagtccgacagccgagcaaatagttaactatcta-t 309

                                                                       
Query: 61  gccaacagtgcgaggcttctttacagtttcttcagtcattatgccagcaaaagttgttca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 310 gccaacagtgcgaggcttctttacagtttcttcagtcattatgccagcaaaagt-gttca 368

                                                                       
Query: 121 gggagcgccttcttagaaacaaggaactatgtggaaagggtggtgttctttttctggctc 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 369 gggagcgccttcttagaaacaaggaactatgtggaaagggtggtgttctttt-ctggctc 427

                                                                       
Query: 181 atggcatcttgaagttaaaaatcacagctccctttgtagagtcatctacagttgtggctg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 atggcatcttgaagttaaaaatcacagctccctttgtagagtcatctacagttgtggctg 487

                                                                       
Query: 241 ctgtatcaagactaaaagctaaagtgctatcaattctattgcatctgtgtgaagcagaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 ctgtatcaagactaaaagctaaagtgctatcaattctattgcatctgtgtgaagcagaaa 547

                                                                       
Query: 301 gcatttcttaccttgatgaggttgcaagttctccaggaagcctagatttggccaaatctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 gcatttcttaccttgatgaggttgcaagttctccaggaagcctagatttggccaaatctg 607

                                                             
Query: 361 ttgctttagaggttcttgaattattaaaggctgcacttagtaaagatccc 410
           |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 608 ttgctttagaggttcttgaattattaaaggctgctcttagtaaagatccc 657