Jatropha Genome Database

JcCA0219971.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0219971.10 - phase: 0 
         (213 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02488                                                            402   e-112

>KJC_c02488 
          Length = 918

 Score =  402 bits (203), Expect = e-112
 Identities = 210/211 (99%), Gaps = 1/211 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggcaaggaaaatgcttatcgatggagagctgaatcactccaatgaagaggagaccaac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 754 atggcaaggaaaatgcttatcgatggagagctgaatcactccaatgaagaggagac-aac 696

                                                                       
Query: 61  tatgattttgacttgttcgtcattggagctggaagcggtggtgttcgtgcttctaggttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 tatgattttgacttgttcgtcattggagctggaagcggtggtgttcgtgcttctaggttt 636

                                                                       
Query: 121 tcggctaattatggggccaaaaaggttgggatttgtgagctgccttatcacccaatcagc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635 tcggctaattatggggccaaaaaggttgggatttgtgagctgccttatcacccaatcagc 576

                                          
Query: 181 tcagacacagctggaggagttggtggaacgt 211
           |||||||||||||||||||||||||||||||
Sbjct: 575 tcagacacagctggaggagttggtggaacgt 545