Jatropha Genome Database

JcCA0216521.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0216521.10 - phase: 2 /partial/short
         (134 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c02600                                                             60   1e-09
KJC_c00873                                                             60   1e-09

>KJC_c02600 
          Length = 920

 Score = 60.0 bits (30), Expect = 1e-09
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                       
Query: 13  caaggaatcgttccatttgtatttgccaaagaatacaatgtccacgctgacatacttagc 72
           |||||||| ||||||||||| ||||||||||| ||||| |||||  | | ||| ||||||
Sbjct: 271 caaggaattgttccatttgtgtttgccaaagagtacaacgtccatcccgccattcttagc 330

                 
Query: 73  actgcg 78
           ||||||
Sbjct: 331 actgcg 336


>KJC_c00873 
          Length = 801

 Score = 60.0 bits (30), Expect = 1e-09
 Identities = 57/66 (86%)
 Strand = Plus / Plus

                                                                       
Query: 13  caaggaatcgttccatttgtatttgccaaagaatacaatgtccacgctgacatacttagc 72
           |||||||| ||||||||||| ||||||||||| ||||| |||||  | | ||| ||||||
Sbjct: 648 caaggaattgttccatttgtgtttgccaaagagtacaacgtccatcccgccattcttagc 707

                 
Query: 73  actgcg 78
           ||||||
Sbjct: 708 actgcg 713