Jatropha Genome Database

JcCA0214811.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0214811.10 - phase: 0 /pseudo
         (488 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c03918                                                            418   e-117

>KJC_c03918 
          Length = 908

 Score =  418 bits (211), Expect = e-117
 Identities = 226/231 (97%)
 Strand = Plus / Plus

                                                                       
Query: 149 gccaatatgacgtaatagtagatgcaacagataatgccccaagccgttacatgatcagtg 208
           ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1   gccaatatgacataatagtagatgcaacagataatgcaccaagccgttacatgatcagtg 60

                                                                       
Query: 209 attgttgtgtggtgttgggaaagcctcttgtttctggtgctgcattgggattagaagggc 268
           ||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||||
Sbjct: 61  attgttgtgtggtgttgggaaagcctcttgtatcaggtgcggcattgggattagaagggc 120

                                                                       
Query: 269 agctcacagtttataattacaaaggaggtccatgctatcgatgcctttttccaaccccac 328
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 agctcacagtttataattacaaaggaggtccatgctatcgatgcctttttccaaccccac 180

                                                              
Query: 329 ctcctacaacagcatgccaaagatgtgctgatagtggagttttaggagttg 379
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ctcctacaacagcatgccaaagatgtgctgatagtggagttttaggagttg 231