Jatropha Genome Database

JcCA0207521.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0207521.20 + phase: 1 /TE/partial
         (1345 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c08276                                                            494   e-139

>KJC_c08276 
          Length = 494

 Score =  494 bits (249), Expect = e-139
 Identities = 304/322 (94%), Gaps = 9/322 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgacagtatgggtgacggaaagaaggtggatataagttttcactcagagagtccctcac 60
           |||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||||
Sbjct: 491 ctgacagtatgggtgacggaaag---gtggatataagttttcacttagagagtccctcac 435

                                                                       
Query: 61  ttcatattagtcgagtgaagtcagatggaacaaacttcctggcttggtct------tgtt 114
           |||| ||||||| |||||||| |||||||||||||| |||||||||||||      ||||
Sbjct: 434 ttcagattagtccagtgaagttagatggaacaaactacctggcttggtctcggtcttgtt 375

                                                                       
Query: 115 tattatttattgaagcaagaggtttgcaaggataccttgatggtggagcgattaaaccag 174
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 374 tattatttattgaagcaagaggtttgcaaggataccttgatggtggagcgactaaaccag 315

                                                                       
Query: 175 tttcaacagatccgggttttaacaaatggaaatccgagaattctcttattatgtcttggt 234
           |||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 314 tttcgacagatccgggttttaacaaatgaaaatccgaaaattctcttattatgtcttggt 255

                                                                       
Query: 235 taataaattctatgcagccaactatttcccgaggatatttgcttcttgatacagctaaga 294
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 taataaattctatgcagccaactatttcccgaggatatttgcttcttgatacagctaaga 195

                                 
Query: 295 agatatgggatgctgcttcaca 316
           ||||||||||||||||||||||
Sbjct: 194 agatatgggatgctgcttcaca 173



 Score =  170 bits (86), Expect = 6e-42
 Identities = 111/118 (94%), Gaps = 1/118 (0%)
 Strand = Plus / Minus

                                                                       
Query: 315 catgaaaccaagcaaggagatctgactatcgctcagtattttgctaaacttagtgggtta 374
           |||||||||||||| ||||||||||| |||||||||||||||||  | ||||||||||||
Sbjct: 117 catgaaaccaagcagggagatctgaccatcgctcagtattttgcgga-cttagtgggtta 59

                                                                     
Query: 375 tggcaggaactagattgttatcaagactttcaagcaaaatgtactgatgatgcgactc 432
           |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||
Sbjct: 58  tggcaggaactagattattatcaagactttcaagcaagatgtactgatgatgcgactc 1