Jatropha Genome Database
- JcCA0172201.10
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0172201.10 - phase: 0 /partial
(490 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c08105 876 0.0
KJC_c05988 54 3e-07
KJC_c01868 54 3e-07
KJC_c00989 54 3e-07
>KJC_c08105
Length = 743
Score = 876 bits (442), Expect = 0.0
Identities = 458/462 (99%), Gaps = 1/462 (0%)
Strand = Plus / Minus
Query: 22 agaaatcaagatgatgttgatgcaatcatgctggatattgatggaacgccaaacaagtca 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 agaaatcaagatgatgttgatgcaatcatgctggatattgatggaacgccaaacaagtca 681
Query: 82 aaacttggagctaatgcgatccttggggtgtctctgagcatatgccgggctggtgctgga 141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 aaacttggagctaatgcgatccttggggtgtctctgagcatatgccgggctggtgctgga 621
Query: 142 gcaaaaggattgcccttatacaagcacattcaagaattgtcgggaacgaaggagcttgtt 201
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gcaaaaggattgcccttatacaagcacattcaagaattgtcgggaacgaaggagcttgtt 561
Query: 202 atgccagttccagcttttaatgtcataaatggaggcagtcatgctggaaataatttagct 261
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atgccagttccagcttttaatgtcataaatggaggcagtcatgctggaaataatttagct 501
Query: 262 atgcaagaatttatgatattgccagtaggtgctacctcattcgccgaggccttgcgcatg 321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 atgcaagaatttatgatattgccagtaggtgctacctcattcgccgaggccttgcgcatg 441
Query: 322 ggtagcgaagtttaccatacgctgaagggaattatcaaggcaaagtatggacaggatgct 381
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 440 ggtagcgaagtttaccatacgctgaagggaattatcaaggcaaacaagggacaggatgct 381
Query: 382 tgcaatgtgggagatgaagggggatttgctcctaatgtgcaggataataggggagggact 441
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 380 tgcaatgtgggagatgaagggggatttgctcctaatgtgcaggataata-gggagggact 322
Query: 442 tgttttgctcatcgacgcaatcgagaaggctggttacactgg 483
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgttttgctcatcgacgcaatcgagaaggctggttacactgg 280
>KJC_c05988
Length = 443
Score = 54.0 bits (27), Expect = 3e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 364 aagtatggacaggatgcttgcaatgtgggagatgaagggggatttgc 410
||||||||||||||||| |||||||||||||||||| || |||||
Sbjct: 11 aagtatggacaggatgccaccaatgtgggagatgaaggtggctttgc 57
>KJC_c01868
Length = 544
Score = 54.0 bits (27), Expect = 3e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 364 aagtatggacaggatgcttgcaatgtgggagatgaagggggatttgc 410
||||||||||||||||| |||||||||||||||||| || |||||
Sbjct: 225 aagtatggacaggatgccaccaatgtgggagatgaaggtggctttgc 179
>KJC_c00989
Length = 595
Score = 54.0 bits (27), Expect = 3e-07
Identities = 42/47 (89%)
Strand = Plus / Minus
Query: 364 aagtatggacaggatgcttgcaatgtgggagatgaagggggatttgc 410
||||||||||||||||| |||||||||||||||||| || |||||
Sbjct: 172 aagtatggacaggatgccaccaatgtgggagatgaaggtggctttgc 126