Jatropha Genome Database

JcCA0165421.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0165421.10 + phase: 0 
         (219 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06451                                                            218   4e-57

>KJC_c06451 
          Length = 692

 Score =  218 bits (110), Expect = 4e-57
 Identities = 145/150 (96%), Gaps = 5/150 (3%)
 Strand = Plus / Minus

                                                                       
Query: 8   tcgctgattccggttgtttgatggaaaat-ggagggag-ttgcc-tgccgtgcacgcccg 64
           ||||||||||||||||||||||||||||| |||||||| ||||| ||||||||| |||||
Sbjct: 692 tcgctgattccggttgtttgatggaaaataggagggaggttgccctgccgtgca-gcccg 634

                                                                       
Query: 65  aggaggagaaacagattgtcaaggagttgatcgatgaagccgagcttgatttgaaggaag 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 633 aggaggagaaacagattgtcaaggagttgatcgatgaagccgagcttgatttgaa-gaag 575

                                         
Query: 125 gcaacttgtactacgttgtttccgccaggt 154
           ||||||||||||||||||||||||||||||
Sbjct: 574 gcaacttgtactacgttgtttccgccaggt 545