Jatropha Genome Database

JcCA0155261.40
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0155261.40 - phase: 2 /TE/pseudo/partial
         (1968 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c05637                                                             68   9e-11

>KJC_c05637 
          Length = 676

 Score = 67.9 bits (34), Expect = 9e-11
 Identities = 73/86 (84%)
 Strand = Plus / Minus

                                                                        
Query: 1881 ttaaatcaaaagtttttattcagaattgattgtaaatctgctaaagatgttttattacaa 1940
            ||||||||||| |||||| |  | ||||||||||||||||| ||||||||| ||    ||
Sbjct: 245  ttaaatcaaaaatttttacttcgtattgattgtaaatctgcaaaagatgttctacagaaa 186

                                      
Query: 1941 gatattcaaaaccttgcctctaaaca 1966
            ||| | ||||||||||||||||||||
Sbjct: 185  gatgtccaaaaccttgcctctaaaca 160