Jatropha Genome Database

JcCA0155101.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0155101.20 - phase: 0 
         (462 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c00134                                                            212   6e-55

>KJC_c00134 
          Length = 867

 Score =  212 bits (107), Expect = 6e-55
 Identities = 238/279 (85%), Gaps = 2/279 (0%)
 Strand = Plus / Minus

                                                                       
Query: 67  gacataacctctatatccagcaaaggtggaagagttcagtgcatgcaggtgtggcctcca 126
           ||||||||||||||  ||||||| || || ||||| || |||||| ||||||||||| ||
Sbjct: 691 gacataacctctattgccagcaacggcggcagagtccaatgcatgaaggtgtggcctaca 632

                                                                       
Query: 127 gttggaaagaagttctttgagactctctcatacctgccacctctctcccaagatcaatta 186
              |||  ||||   |||||||||||||||||||| ||||| ||| ||   || ||||| 
Sbjct: 631 caaggattgaagaagtttgagactctctcataccttccaccactcaccagggagcaattg 572

                                                                       
Query: 187 gccaaggaggttcattaccttcttcgca-tggatagggttccttgcttggaatttgagtt 245
           || ||||| ||| | |||||||| |||| ||||| ||||||||||||||||||| |||||
Sbjct: 571 gctaaggaagttgaataccttctccgcagtggat-gggttccttgcttggaattcgagtt 513

                                                                       
Query: 246 ggagcacggatttgtttaccgtgagaaccacagatcccctggttactacgacggacgcta 305
           ||||||||||||||| |||||||||||| ||||||| || || |||||||| ||||||||
Sbjct: 512 ggagcacggatttgtgtaccgtgagaacaacagatcaccaggatactacgatggacgcta 453

                                                  
Query: 306 ctggacaatgtggaagctccccatgtttggttgcacaga 344
           |||||||||||||||||| ||||||||||| ||||||||
Sbjct: 452 ctggacaatgtggaagctgcccatgtttggatgcacaga 414