Jatropha Genome Database
- JcCA0155041.20
BLASTN 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= JcCA0155041.20 - phase: 1 /partial
(689 letters)
Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09
21,225 sequences; 12,776,988 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
KJC_c03792 831 0.0
KJC_c00704 438 e-123
KJC_c06934 58 3e-08
>KJC_c03792
Length = 463
Score = 831 bits (419), Expect = 0.0
Identities = 463/470 (98%), Gaps = 7/470 (1%)
Strand = Plus / Plus
Query: 197 gatggatactagtaataaggggaaaattaacattgatgacctaagaattgggctgcagaa 256
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatggatactagtaataaggg--aaattaacattgatgacctaagaattgggctgcagaa 58
Query: 257 gctaggtcatcaaatcacggaaactgatcttcaatttctaatggaagctggtgatctaga 316
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 59 gctaggtcatcaaatcacggaaactgatcttcaatttctaatggaagctggtgatctaga 118
Query: 317 tcgagatgggcatttggactatggagaatttgtgaccatttctgttcacctaagaaagat 376
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 119 tcgagatgggcatttggactatggagaatttgtgaccatttctgttcacctaagaa-gat 177
Query: 377 gggtaatgatgaacacctccgaaaagcattcgaattctttgataggaaccaaagtgggta 436
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 gggtaatgatgaacacctccgaaaagcattcgaattctttgataggaaccaaagtgggta 237
Query: 437 catagaaattgaggagctaagacatgctttggctgatgaagttgttgaaaacatcgaaga 496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 catagaaattgaggagctaagacatgctttggctgatgaagttgttgaaaacatcgaaga 297
Query: 497 cgtcattaacgcaattattcatgatgtggacacagacaaggatggaagaataagctatga 556
||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||
Sbjct: 298 cgtcattaacgcaattattcatgatgtggacacagac-aggatggaagaat-agctatga 355
Query: 557 tgaatttgcaacaatgatgaaggccggtacagattggcgaaaagcatcaaggcagtattc 616
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 356 tgaatttgc-acaatgatgaaggcc-gtacagattggcgaaaagcatcaaggcagtattc 413
Query: 617 acgagaacggttcagtaatctgagtctcaaattaatgaaggatggttcat 666
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 acgagaacggttcagtaatctgagtctcaaattaatgaaggatggttcat 463
>KJC_c00704
Length = 1388
Score = 438 bits (221), Expect = e-123
Identities = 221/221 (100%)
Strand = Plus / Minus
Query: 1 ttacagcacagcaagttctagatcatccctggttgcaaaatgcaaagaaggctcctaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 ttacagcacagcaagttctagatcatccctggttgcaaaatgcaaagaaggctcctaatg 162
Query: 61 tatctttaggtgaaacagtgaaagcaaggctcaagcaattctctctaatgaacaaactca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 tatctttaggtgaaacagtgaaagcaaggctcaagcaattctctctaatgaacaaactca 102
Query: 121 agaaaagagctctgagggtcatagctgagcatttgtccgtagaggaagttgctggcataa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 agaaaagagctctgagggtcatagctgagcatttgtccgtagaggaagttgctggcataa 42
Query: 181 aggagggcttccaagtgatggatactagtaataaggggaaa 221
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 41 aggagggcttccaagtgatggatactagtaataaggggaaa 1
>KJC_c06934
Length = 640
Score = 58.0 bits (29), Expect = 3e-08
Identities = 53/61 (86%)
Strand = Plus / Plus
Query: 1 ttacagcacagcaagttctagatcatccctggttgcaaaatgcaaagaaggctcctaatg 60
||||||| || ||||| || || ||||| |||||||||||||| ||||||||||| ||||
Sbjct: 574 ttacagctcatcaagtgcttgaacatccttggttgcaaaatgcgaagaaggctccaaatg 633
Query: 61 t 61
|
Sbjct: 634 t 634