Jatropha Genome Database

JcCA0154801.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0154801.10 + phase: 0 
         (597 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06753                                                            650   0.0  

>KJC_c06753 
          Length = 1205

 Score =  650 bits (328), Expect = 0.0
 Identities = 348/352 (98%), Gaps = 2/352 (0%)
 Strand = Plus / Minus

                                                                       
Query: 78  gttatttcttcttggtttggacaaatatgggaaaggtgactggcgaagtatttccagaaa 137
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 gttatttcttcttggtttggacaaatatgggaaaggtgactggcgaagtatttccagaaa 292

                                                                       
Query: 138 ctttgttgtgacaaggacacctacgcaagtggcaagccatgcacaaaaatatttcattcg 197
           ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||
Sbjct: 291 ctttgttgtgacaaggacacccacgcaagtggcaagccatgcacaaaaaaatttcat-cg 233

                                                                       
Query: 198 tttgaactcgatgaacaaagataggaggcgttccagcattcatgatatcaccagtgttgg 257
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tttgaactcgatgaacaaagataggaggcgttccagcattcatgatatcaccagtgttgg 173

                                                                       
Query: 258 caatggagatatttcagcgccacaaggaccaataactggtcaaacaaatggttctgctgc 317
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 caatggagatatttcagcgccacaaggaccaataactggtcaaacaaatggttctgctgc 113

                                                                       
Query: 318 aggaggttcctctggtaaagctgctaaacaac-cccctcaacaccctactggacctccag 376
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 112 aggaggttcctctggtaaagctgctaaacaacccccctcaacaccctactggacctccag 53

                                                               
Query: 377 gagttggtgtttatggtcctccgactatagggcaacctataggaggtcccct 428
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  gagttggtgtttatggtcctccgactatagggcaacctataggaggtcccct 1