Jatropha Genome Database

JcCA0154411.10
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0154411.10 + phase: 0 
         (1215 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c09716                                                            916   0.0  

>KJC_c09716 
          Length = 530

 Score =  916 bits (462), Expect = 0.0
 Identities = 475/478 (99%), Gaps = 1/478 (0%)
 Strand = Plus / Minus

                                                                        
Query: 738  tatagctacgctgggagcaactttagctaggcatcggtctaaacccagggtctatatagg 797
            |||||||||||||| ||||||||||||||||||||||||  |||||||||||||||||||
Sbjct: 530  tatagctacgctgg-agcaactttagctaggcatcggtcgtaacccagggtctatatagg 472

                                                                        
Query: 798  atgcatgaagtccggtccagtccttgctcaaaagggagtgaaataccatgaacctgagta 857
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471  atgcatgaagtccggtccagtccttgctcaaaagggagtgaaataccatgaacctgagta 412

                                                                        
Query: 858  ttggaaatttggggaagaaggaaacaagtatttccgtcacgctacagggcagctatatgc 917
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411  ttggaaatttggggaagaaggaaacaagtatttccgtcacgctacagggcagctatatgc 352

                                                                        
Query: 918  tatttcaaatgatttggccacttatgtatcaattaaccaacacgtgttacacaagtatgc 977
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351  tatttcaaatgatttggccacttatgtatcaattaaccaacacgtgttacacaagtatgc 292

                                                                        
Query: 978  taatgaggatgtatcattggggtcgtggttcattggattggatgtggatcatattgatga 1037
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291  taatgaggatgtatcattggggtcgtggttcattggattggatgtggatcatattgatga 232

                                                                        
Query: 1038 ccggagactctgctgtggtacaccgcctgattgcgagtggaaggcccaggcaggcaacat 1097
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231  ccggagactctgctgtggtacaccgcctgattgcgagtggaaggcccaggcaggcaacat 172

                                                                        
Query: 1098 ctgcgttgcttcatttgattggagctgcagtgggatttgcaagtccgttgatagaatcaa 1157
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171  ctgcgttgcttcatttgattggagctgcagtgggatttgcaagtccgttgatagaatcaa 112

                                                                      
Query: 1158 ggaggttcaccggcgttgtggggaaggtgagaatgctttatggagtgcagaattctaa 1215
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111  ggaggttcaccggcgttgtggggaaggtgagaatgctttatggagtgcagaattctaa 54