Jatropha Genome Database

JcCA0154091.20
Show Alignment:  
BLASTN 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= JcCA0154091.20 - phase: 0 
         (618 letters)

Database: jatropha cDNA leaf/callus assembly
(MIRA3.0.5:c=standard,s=non-debris singleton) 2010/06/09 
           21,225 sequences; 12,776,988 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

KJC_c06709                                                            672   0.0  

>KJC_c06709 
          Length = 565

 Score =  672 bits (339), Expect = 0.0
 Identities = 360/368 (97%), Gaps = 1/368 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggtaagcagtcataattaccatcgccctcatagactacttcttgatacacaatcaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 atggtaagcagtcataattaccatcgccctcatagactacttcttgatacacaatcaagc 334

                                                                       
Query: 61  agtacagcaccaacctcagatggaagcagagcgcgcagtggaagctatactaatgaagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 agtacagcaccaacctcagatggaagcagagcgcgcagtggaagctatactaatgaagca 274

                                                                       
Query: 121 aattttgacacaaatatggttattatattagcagctttgctctgtgcattaatatgtgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 aattttgacacaaatatggttattatattagcagctttgctctgtgcattaatatgtgca 214

                                                                       
Query: 181 cttgggttaaactcaatagttcgctgtgcattaaggtgtagcagaaggtttagcttcgag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 cttgggttaaactcaatagttcgctgtgcattaaggtgtagcagaaggtttagcttcgag 154

                                                                       
Query: 241 acagctgatgaggcagcagctcgtttagcagcaactgggcttnnnnnnngcgcattgaga 300
           ||||||||||||||||||||||||||||||||||||||||||       |||||||||||
Sbjct: 153 acagctgatgaggcagcagctcgtttagcagcaactgggcttaaaaaaagcgcattgaga 94

                                                                       
Query: 301 caaattcctgtagttatatatggttcagcaggagatggaatacaaataatagctacag-a 359
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 93  caaattcctgtagttatatatggttcagcaggagatggaatacaaataatagctacagta 34

                   
Query: 360 ttgtgcaa 367
           ||||||||
Sbjct: 33  ttgtgcaa 26